# HG changeset patch
# User yhoogstrate
# Date 1448009436 18000
# Node ID b5c879e950f5c182a343e9bf203479478fd4214f
# Parent  59a2f9ad76dd8f3787c43d86cb706d8f0517319f
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools commit 402ebee914f2286aa9d98223f501f06c1e4b9c22-dirty

diff -r 59a2f9ad76dd -r b5c879e950f5 tools/cgatools17/listvariants_v17.xml
--- a/tools/cgatools17/listvariants_v17.xml	Tue Nov 17 04:43:00 2015 -0500
+++ b/tools/cgatools17/listvariants_v17.xml	Fri Nov 20 03:50:36 2015 -0500
@@ -13,6 +13,7 @@
             listvariants
             --beta
 
+            --reference
             #if $reference_gene_sets_source.source_select == "indexed_filtered"
                 ${reference_gene_sets_source.crr.fields.crr_path}
             #else if $reference_gene_sets_source.source_select == "history"
@@ -61,7 +62,7 @@
             <when value="mastervar">
                 <repeat name="varfiles" title="Variant files" min="1">
                     <param name="input" type="data" format="cg_mastervar" label="Dataset"/>
-                </repeat>					
+                </repeat>
             </when>
         </conditional>
 
@@ -79,7 +80,7 @@
                 <param name="list" type="data" format="tabular" label="Variant listing"/>
             </when>
         </conditional>
-        <param name="fname" type="text" value="" label="Prefix for your output file" help="Optional"/>		
+        <param name="fname" type="text" value="" label="Prefix for your output file" help="Optional"/>
     </inputs>
   
     <outputs>