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1 <tool id="header_remove" name="Strip Header" version="1">
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2
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3 <description> remove header from a file </description>
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4
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5 <command interpreter="bash">
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6 strip_header.sh
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7 $infile
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8 $outputfile
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9 $header
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10 "$commentchar"
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11 </command>
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12
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13 <outputs>
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14 <data format="tabular" name="outputfile" label="${sample} - Header Stripped on ${on_string}"/>
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15 <data format="tabular" name="header" label="${sample} - Stripped Header on ${on_string}"/>
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16 </outputs>
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17
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18 <inputs>
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19
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20 <param name="infile" type="data" label="Select file to extract columns from" />
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21 <param name="commentchar" type="text" value="#" label="Comment character" help="Any lines starting with this character will be removed (as well as any empty lines)">
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22 <sanitizer sanitize="False"/>
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23 </param>
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24 <param name="sample" type="text" value="" label="Sample Name" help="Optional. For file naming purposes only"/>
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25
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26 </inputs>
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27
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28 <help>
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29
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30
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31 **What it does**
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32 Removes header from a file. Any lines starting with the comment character specified by user, as well as any empty lines will be removed.
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33
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34 </help>
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35 </tool>
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