Mercurial > repos > saskia-hiltemann > file_manipulation
comparison strip_header.xml @ 0:e77c9484b2d0 draft default tip
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| author | saskia-hiltemann |
|---|---|
| date | Thu, 22 Oct 2015 09:18:30 -0400 |
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| -1:000000000000 | 0:e77c9484b2d0 |
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| 1 <tool id="header_remove" name="Strip Header" version="1"> | |
| 2 | |
| 3 <description> remove header from a file </description> | |
| 4 | |
| 5 <command interpreter="bash"> | |
| 6 strip_header.sh | |
| 7 $infile | |
| 8 $outputfile | |
| 9 $header | |
| 10 "$commentchar" | |
| 11 </command> | |
| 12 | |
| 13 <outputs> | |
| 14 <data format="tabular" name="outputfile" label="${sample} - Header Stripped on ${on_string}"/> | |
| 15 <data format="tabular" name="header" label="${sample} - Stripped Header on ${on_string}"/> | |
| 16 </outputs> | |
| 17 | |
| 18 <inputs> | |
| 19 | |
| 20 <param name="infile" type="data" label="Select file to extract columns from" /> | |
| 21 <param name="commentchar" type="text" value="#" label="Comment character" help="Any lines starting with this character will be removed (as well as any empty lines)"> | |
| 22 <sanitizer sanitize="False"/> | |
| 23 </param> | |
| 24 <param name="sample" type="text" value="" label="Sample Name" help="Optional. For file naming purposes only"/> | |
| 25 | |
| 26 </inputs> | |
| 27 | |
| 28 <help> | |
| 29 | |
| 30 | |
| 31 **What it does** | |
| 32 Removes header from a file. Any lines starting with the comment character specified by user, as well as any empty lines will be removed. | |
| 33 | |
| 34 </help> | |
| 35 </tool> |