# HG changeset patch # User saskia-hiltemann # Date 1503321367 14400 # Node ID 0f2b740536fbfc18fd7d78f0214f9815951fcf50 # Parent 42076db43d42148c288e89927361806fd5c76d8a Uploaded diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/Readme.txt diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/component.json diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/34cdb56b2c.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.columns.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.oLanguage.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.oLanguage.oAria.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.oLanguage.oPaginate.html diff -r 42076db43d42 -r 0f2b740536fb DataTables-1.9.4/docs/DataTable.defaults.oSearch.html diff -r 42076db43d42 -r 0f2b740536fb 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42076db43d42 -r 0f2b740536fb iReport.sh diff -r 42076db43d42 -r 0f2b740536fb iReport.xml --- a/iReport.xml Mon Nov 16 08:56:22 2015 -0500 +++ b/iReport.xml Mon Aug 21 09:16:07 2017 -0400 @@ -1,525 +1,518 @@ - - - - - create an HTML report - - - REPOSITORY_PATH - - - - - #set $labelb64 = str($label).encode('base64').replace('\n','') - #set $coverimageb64 = str($coverimage).encode('base64').replace('\n','') - - iReport.sh - --toolpath \$REPOSITORY_PATH - --galaxypath ${report.files_path} - --htmlout ${report} - --minwidth ${minwidth} - --coverimage -${coverimageb64} - #for $i, $t in enumerate($tabs) - #set $tabtitleb64 = str($t.tabtitle).encode('base64').replace('\n','') - --tab ${tabtitleb64} - #for $j, $u in enumerate($t.content) - #if $u.filetype.itemtype == "image" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.zoomlevel}:${u.filetype.zoomenable}:${u.filetype.align}" - #else if $u.filetype.itemtype == "table" - #if $u.filetype.collink.columnhyperlink == "Y" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.fancy}:Y:${u.filetype.collink.urlcol}:${u.filetype.collink.urlprefix}:${u.filetype.collink.urlsuffix}:${u.filetype.collink.urlitems}:${u.filetype.minw}:${u.filetype.minh}" - #else - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.fancy}:N:${u.filetype.minw}:${u.filetype.minh}" - #end if - #else if $u.filetype.itemtype == "link" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${__app__.security.encode_id($u.filetype.item.id)}:${u.filetype.ireport}:${u.filetype.item2}:${localhost}:${proxy}" - #else if $u.filetype.itemtype == "weblink" - #set $itemb64 = str($u.filetype.item).encode('base64').replace('\n','') - #set $item2b64 = str($u.filetype.item2).encode('base64').replace('\n','') - --item "${t.tabtitle}:${u.filetype.itemtype}:${itemb64}:${u.filetype.break}:${item2b64}" - #else if $u.filetype.itemtype == "text" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.md}" - #else if $u.filetype.itemtype == "textfile" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.md}" - #else if $u.filetype.itemtype == "htmlfile" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.height}:${__app__.security.encode_id($u.filetype.item.id)}:${u.filetype.ireport}:${localhost}:${proxy}" - #else if $u.filetype.itemtype == "htmlpage" - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}:${u.filetype.height}" - #else if $u.filetype.itemtype == "genomebrowser" - #set $itemb64 = str($u.filetype.initialview).encode('base64').replace('\n','') - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.genomebuild}:${u.filetype.break}:${__app__.security.encode_id($report.id)}:${localhost}:${itemb64}" - --newgb "-" - #for $k, $gb in enumerate($u.filetype.gbtracks) - --genomebrowsertrack ${gb.item}:${gb.tracklabel}:${gb.gbfiletype} - #end for - #else - --item "${t.tabtitle}:${u.filetype.itemtype}:${u.filetype.item}:${u.filetype.break}" - #end if - #end for - #end for - --label ${labelb64} - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + create an HTML report + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ============ - iReport - ============ - - iReport is a tool for the easy creation of HTML reports from Galaxy datasets. Ideal to use as final step in a pipeline to display all results in a single, interactive report. - - - **What's new** - - - MarkDown support - - HTML content item type - - Link to download entire iReport on cover page - - - - **How to use** - - - Specify report title and cover image (url) - - Add any number of named tabs - - Add content items to each tab - - 1. Text Field - 2. Text File - 3. PDF File - 4. HTML File - 5. Table - 6. Image File - 7. Links (URL/dataset) - 8. Links to all files in an archive dataset - - **Example History** - - http://galaxy-demo.trait-ctmm.cloudlet.sara.nl/u/saskia-hiltemann/h/gcc2014-ireport-about-ireport - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/README.md diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/bower.json diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/component.json diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/example/frame.absolute.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/example/frame.content.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/example/frame.hover.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/example/frame.nested.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/example/index.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/gruntfile.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/iframeResizer.jquery.json diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/js/iframeResizer.contentWindow.min.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/js/iframeResizer.min.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/package.json diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/src/iframeResizer.contentWindow.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/src/iframeResizer.contentWindow.map diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/src/iframeResizer.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/src/iframeResizer.map diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/_init.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/background.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/changePage.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/close.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/getId.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/interval.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/lateImageLoad.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/margin.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/mutationObserver.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/nested.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resize.contentWidth.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resize.width.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/djb.jpg diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/frame.content.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/frame.nested.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/jquery.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/qunit.css diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/qunit.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/resources/testLib.js diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/scrolling.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/sendMessage.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/setHeightCalculationMethod.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/size.html diff -r 42076db43d42 -r 0f2b740536fb iframe-resizer/test/v1.html diff -r 42076db43d42 -r 0f2b740536fb intro.jpg diff -r 42076db43d42 -r 0f2b740536fb ireport_css.css diff -r 42076db43d42 -r 0f2b740536fb ireport_javascript.js diff -r 42076db43d42 -r 0f2b740536fb ireport_jquery.js diff -r 42076db43d42 -r 0f2b740536fb jquery-1.10.2.js diff -r 42076db43d42 -r 0f2b740536fb jquery-ui.css diff -r 42076db43d42 -r 0f2b740536fb jquery-ui.js diff -r 42076db43d42 -r 0f2b740536fb jquery.dataTables.css diff -r 42076db43d42 -r 0f2b740536fb jquery.dataTables.css.new diff -r 42076db43d42 -r 0f2b740536fb jquery.dataTables.js diff -r 42076db43d42 -r 0f2b740536fb jquery.dataTables.js.vew diff -r 42076db43d42 -r 0f2b740536fb md.css diff -r 42076db43d42 -r 0f2b740536fb test.html diff -r 42076db43d42 -r 0f2b740536fb tool_dependencies.xml --- a/tool_dependencies.xml Mon Nov 16 08:56:22 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,7 +0,0 @@ - - - - $INSTALL_DIR - - -