Mercurial > repos > saskia-hiltemann > virtual_normal_analysis

comparison JunctionDiff-vs-background.sh @ 2:885ba15c2564 draft

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author saskia-hiltemann
date Mon, 03 Aug 2015 05:45:16 -0400
parents 1209f18a5a83
children
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1:1c6710924e80 2:885ba15c2564
18 --outputfile_filtered) output_filtered=$2;shift;; 18 --outputfile_filtered) output_filtered=$2;shift;;
19 --outputfile_report) output_report=$2;shift;; 19 --outputfile_report) output_report=$2;shift;;
20 --scoreThresholdA) scoreThresholdA=$2;shift;; 20 --scoreThresholdA) scoreThresholdA=$2;shift;;
21 --scoreThresholdB) scoreThresholdB=$2;shift;; 21 --scoreThresholdB) scoreThresholdB=$2;shift;;
22 --distance) distance=$2;shift;; 22 --distance) distance=$2;shift;;
23 --minlength) minlength=$2;shift;; 23 --minlength) minlength=$2;shift;;
24 -h) shift;; 24 -h) shift;;
25 --) shift;break;; 25 --) shift;break;;
26 -*) usage;; 26 -*) usage;;
27 *) break;; 27 *) break;;
28 esac 28 esac