Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation
comparison data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 0:0442068f5c91 draft
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| author | scottx611x |
|---|---|
| date | Tue, 26 Apr 2016 13:33:16 -0400 |
| parents | |
| children | 9f718726ed86 |
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| -1:000000000000 | 0:0442068f5c91 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.0"> | |
| 3 <description>gene annotation fetcher</description> | |
| 4 <stdio> | |
| 5 <exit_code description="Error" level="fatal" range="1:" /> | |
| 6 </stdio> | |
| 7 <command interpreter="python"> | |
| 8 <![CDATA[ | |
| 9 data_manager.py --out "${out_file}" | |
| 10 #if $gene_annotation_url: | |
| 11 --url "${gene_annotation_url}" | |
| 12 #end if | |
| 13 #if $database_name: | |
| 14 --name "${database_name}" | |
| 15 #end if | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> | |
| 20 <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" /> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data format="data_manager_json" name="out_file" /> | |
| 24 </outputs> | |
| 25 </tool> |