Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation
comparison data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 0:0442068f5c91 draft
Uploaded
author | scottx611x |
---|---|
date | Tue, 26 Apr 2016 13:33:16 -0400 |
parents | |
children | 9f718726ed86 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:0442068f5c91 |
---|---|
1 <?xml version="1.0"?> | |
2 <tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.0"> | |
3 <description>gene annotation fetcher</description> | |
4 <stdio> | |
5 <exit_code description="Error" level="fatal" range="1:" /> | |
6 </stdio> | |
7 <command interpreter="python"> | |
8 <![CDATA[ | |
9 data_manager.py --out "${out_file}" | |
10 #if $gene_annotation_url: | |
11 --url "${gene_annotation_url}" | |
12 #end if | |
13 #if $database_name: | |
14 --name "${database_name}" | |
15 #end if | |
16 ]]> | |
17 </command> | |
18 <inputs> | |
19 <param help="Enter a unique identifier, or leave blank for today's date" label="Name for this database" name="database_name" type="text" optional="True" /> | |
20 <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" /> | |
21 </inputs> | |
22 <outputs> | |
23 <data format="data_manager_json" name="out_file" /> | |
24 </outputs> | |
25 </tool> |