Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

comparison data_manager_gene_annotation/data_manager/data_manager.py @ 27:492505471c3f draft

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planemo upload
author scottx611x
date Thu, 23 Jun 2016 15:46:41 -0400
parents 2f03bb5788e1
children aa89322480a0
comparison
equal deleted inserted replaced
26:2f03bb5788e1 27:492505471c3f
26 ) 26 )
27 27
28 args = parser.parse_args() 28 args = parser.parse_args()
29 29
30 30
31 def url_download(url, name): 31 def url_download(url):
32 response = requests.get(url=url, stream=True) 32 response = requests.get(url=url, stream=True)
33 33
34 # Generate file_name 34 # Generate file_name
35 file_name = response.url.split("/")[-1] 35 file_name = response.url.split("/")[-1]
36 36
50 50
51 51
52 def main(args): 52 def main(args):
53 53
54 # Attempt to download gene annotation file from given url 54 # Attempt to download gene annotation file from given url
55 gene_annotation_file_name = url_download(args.url, args.name) 55 gene_annotation_file_name = url_download(args.url)
56 56
57 # Update Data Manager JSON and write to file 57 # Update Data Manager JSON and write to file
58 data_manager_entry = { 58 data_manager_entry = {
59 'data_tables': { 59 'data_tables': {
60 'gene_annotation': { 60 'gene_annotation': {