Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

comparison data_manager_gene_annotation/data_manager_conf.xml @ 22:b47ce1c4373e draft

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planemo upload
author scottx611x
date Thu, 23 Jun 2016 15:11:30 -0400
parents 315742ba24f1
children 492505471c3f
comparison
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21:096657afd137 22:b47ce1c4373e
2 <data_managers> 2 <data_managers>
3 3
4 <data_manager tool_file="data_manager/gene_annotation_fetcher.xml" id="gene_annotation_fetcher" version="1.0.0"> 4 <data_manager tool_file="data_manager/gene_annotation_fetcher.xml" id="gene_annotation_fetcher" version="1.0.0">
5 <data_table name="gene_annotation"> 5 <data_table name="gene_annotation">
6 <output> 6 <output>
7 <column name="date" /> 7 <column name="value" />
8 <column name="dbkey" /> 8 <column name="dbkey" />
9 <column name="name" /> 9 <column name="name" />
10 <column name="path" output_ref="out_file"> 10 <column name="path" output_ref="out_file">
11 <move type="file"> 11 <move type="file">
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${path}</target> 12 <source>${path}</source>
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${path}</target>
13 </move> 14 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gene_annotations/${path}</value_translation> 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gene_annotations/${path}</value_translation>
15 <value_translation type="function">abspath</value_translation> 16 <value_translation type="function">abspath</value_translation>
16 </column> 17 </column>
17 </output> 18 </output>