Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

diff data_manager_conf.xml @ 39:2ab076cf69df draft

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planemo upload for repository https://scottx611x@toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation
author scottx611x
date Fri, 08 Jul 2016 11:17:50 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Fri Jul 08 11:17:50 2016 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<data_managers>
+
+	<data_manager tool_file="data_manager/gene_annotation_fetcher.xml" id="gene_annotation_fetcher" version="1.0.0">
+		<data_table name="gene_annotation">
+			<output>
+				<column name="value" />
+				<column name="dbkey" />
+				<column name="name" />
+				<column name="path" output_ref="out_file">
+					<move type="file">
+						<source>${path}</source>
+						<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gene_annotations/${name}</target>
+					</move>
+					<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${name}</value_translation>
+					<value_translation type="function">abspath</value_translation>
+				</column>
+			</output>
+		</data_table>
+	</data_manager>
+
+</data_managers>