Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

diff data_manager/gene_annotation_fetcher.xml @ 46:9346d2955707 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_gene_annotation/ commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 18:07:39 -0400
parents
children 3a02b8ab423a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/gene_annotation_fetcher.xml	Tue Apr 04 18:07:39 2017 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.1">
+    <description>gene annotation fetcher</description>
+    <requirements>
+        <requirement type="package" version="2.13.0">requests</requirement>
+    </requirements>
+    <command detect_errors="exit_code">
+    <![CDATA[
+        python '$__tool_directory__/data_manager.py' --out '${out_file}'
+        #if $gene_annotation_url:
+            --url '${gene_annotation_url}'
+        #end if
+        #if $database_name:
+            --name '${database_name}'
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param name="database_name" type="text" optional="true" label="Name for this database" help="Enter a unique identifier, or leave blank for today's date" />
+        <param name="gene_annotation_url" type="text" label="Enter URL for gene annotation files" />
+    </inputs>
+    <outputs>
+        <data format="data_manager_json" name="out_file" />
+    </outputs>
+    <help>
+    </help>
+</tool>