Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation
view data_manager_gene_annotation/data_manager/gene_annotation_fetcher.xml @ 34:30039ecf0da0 draft
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author | scottx611x |
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date | Thu, 23 Jun 2016 17:09:05 -0400 |
parents | b47ce1c4373e |
children | d27c122c2424 |
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<?xml version="1.0"?> <tool id="gene_annotation_fetcher_data_manager" name="Gene Annotation Fetch" tool_type="manage_data" version="1.0.0"> <description>gene annotation fetcher</description> <stdio> <exit_code description="Error" level="fatal" range="1:" /> </stdio> <command interpreter="python"> <![CDATA[ data_manager.py --out "${out_file}" #if $gene_annotation_url: --url "${gene_annotation_url}" #end if #if $database_name: --name "${database_name}" #end if ]]> </command> <inputs> <param help="Enter a unique identifier, or leave blank for an auto-generated uuid" label="Name for this database" name="database_name" type="text" optional="True" /> <param label="Enter URL for gene annotation files" name="gene_annotation_url" type="text" optional="False"/> </inputs> <outputs> <data format="data_manager_json" name="out_file" /> </outputs> <tests> <test> <param name="database_name" value="cool_name"/> <param name="gene_annotation_url" value="http://www.scott-ouellette.com/gene_annotations/chr1-hg19_genes.gtf"/> <output name="out_file" file="chr1-hg19_genes.gtf.data_manager_json"/> </test> </tests> </tool>