Mercurial > repos > scottx611x > data_manager_fetch_gene_annotation

changeset 13:865d5b55cce1 draft

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Uploaded
author scottx611x
date Wed, 22 Jun 2016 16:18:10 -0400
parents 967e0c774dd8
children 4fb8bd379972
files data_manager_gene_annotation/data_manager_conf.xml
diffstat 1 files changed, 8 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_gene_annotation/data_manager_conf.xml	Wed Jun 22 15:50:22 2016 -0400
+++ b/data_manager_gene_annotation/data_manager_conf.xml	Wed Jun 22 16:18:10 2016 -0400
@@ -7,7 +7,14 @@
 				<column name="date" />
 				<column name="dbkey" />
 				<column name="name" />
-				<column name="path"/>
+				<column name="path" output_ref="out_file">
+					<move type="directory" relativize_symlinks="True">
+							<!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
+							<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${name}</target>
+					</move>
+					<value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${name}/${path}</value_translation>
+					<value_translation type="function">abspath</value_translation>
+				</column>
 			</output>
 		</data_table>
 	</data_manager>