Mercurial > repos > scottx611x > tophat2_with_gene_annotations

comparison tophat2/tophat2_wrapper.xml @ 18:11a6a9ac5432 draft

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author scottx611x
date Thu, 16 Jun 2016 15:14:50 -0400
parents 620cb7a7ef60
children c9b715a5ca1f
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17:2a1ed6421876 18:11a6a9ac5432
2 <!-- Wrapper compatible with Tophat version 2.0.0+ --> 2 <!-- Wrapper compatible with Tophat version 2.0.0+ -->
3 <description>Gapped-read mapper for RNA-seq data</description> 3 <description>Gapped-read mapper for RNA-seq data</description>
4 <version_command>tophat2 --version</version_command> 4 <version_command>tophat2 --version</version_command>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="2.2.5">bowtie2</requirement> 6 <requirement type="package" version="2.2.5">bowtie2</requirement>
7 <requirement type="package" version="2.0.14">tophat</requirement> 7 <requirement type="package" version="2.1.0">tophat</requirement>
8 </requirements> 8 </requirements>
9 9
10 <command> 10 <command>
11 ## 11 ##
12 ## Set path to index, building the reference if necessary. 12 ## Set path to index, building the reference if necessary.