Mercurial > repos > shellac > guppy_basecaller

annotate env/bin/instance_events @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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1 #!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
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2 # Copyright (c) 2011 Jim Browne http://www.42lines.net
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3 # Borrows heavily from boto/bin/list_instances which has no attribution
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4 #
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5 # Permission is hereby granted, free of charge, to any person obtaining a
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6 # copy of this software and associated documentation files (the
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7 # "Software"), to deal in the Software without restriction, including
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8 # without limitation the rights to use, copy, modify, merge, publish, dis-
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9 # tribute, sublicense, and/or sell copies of the Software, and to permit
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10 # persons to whom the Software is furnished to do so, subject to the fol-
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11 # lowing conditions:
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12 #
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13 # The above copyright notice and this permission notice shall be included
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14 # in all copies or substantial portions of the Software.
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15 #
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16 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
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17 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
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18 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
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19 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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20 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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21 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
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22
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23 VERSION="0.1"
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24 usage = """%prog [options]
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25 Options:
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26 -h, --help show help message (including options list) and exit
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27 """
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28
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29 from operator import itemgetter
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30
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31 HEADERS = {
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32 'ID': {'get': itemgetter('id'), 'length':14},
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33 'Zone': {'get': itemgetter('zone'), 'length':14},
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34 'Hostname': {'get': itemgetter('dns'), 'length':20},
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35 'Code': {'get': itemgetter('code'), 'length':18},
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36 'Description': {'get': itemgetter('description'), 'length':30},
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37 'NotBefore': {'get': itemgetter('not_before'), 'length':25},
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38 'NotAfter': {'get': itemgetter('not_after'), 'length':25},
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39 'T:': {'length': 30},
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40 }
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41
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42 def get_column(name, event=None):
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43 if name.startswith('T:'):
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44 return event[name]
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45 return HEADERS[name]['get'](event)
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46
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47 def list(region, headers, order, completed):
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48 """List status events for all instances in a given region"""
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49
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50 import re
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51
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52 ec2 = boto.connect_ec2(region=region)
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53
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54 reservations = ec2.get_all_reservations()
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55
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56 instanceinfo = {}
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57 events = {}
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58
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59 displaytags = [ x for x in headers if x.startswith('T:') ]
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60
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61 # Collect the tag for every possible instance
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62 for res in reservations:
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63 for instance in res.instances:
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64 iid = instance.id
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65 instanceinfo[iid] = {}
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66 for tagname in displaytags:
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67 _, tag = tagname.split(':', 1)
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68 instanceinfo[iid][tagname] = instance.tags.get(tag,'')
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69 instanceinfo[iid]['dns'] = instance.public_dns_name
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70
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71 stats = ec2.get_all_instance_status()
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72
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73 for stat in stats:
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74 if stat.events:
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75 for event in stat.events:
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76 events[stat.id] = {}
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77 events[stat.id]['id'] = stat.id
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78 events[stat.id]['dns'] = instanceinfo[stat.id]['dns']
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79 events[stat.id]['zone'] = stat.zone
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80 for tag in displaytags:
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81 events[stat.id][tag] = instanceinfo[stat.id][tag]
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82 events[stat.id]['code'] = event.code
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83 events[stat.id]['description'] = event.description
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84 events[stat.id]['not_before'] = event.not_before
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85 events[stat.id]['not_after'] = event.not_after
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86 if completed and re.match('^\[Completed\]',event.description):
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87 events[stat.id]['not_before'] = 'Completed'
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88 events[stat.id]['not_after'] = 'Completed'
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89
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90 # Create format string
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91 format_string = ""
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92 for h in headers:
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93 if h.startswith('T:'):
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94 format_string += "%%-%ds" % HEADERS['T:']['length']
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95 else:
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96 format_string += "%%-%ds" % HEADERS[h]['length']
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97
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98
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99 print format_string % headers
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100 print "-" * len(format_string % headers)
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101
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102 for instance in sorted(events,
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103 key=lambda ev: get_column(order, events[ev])):
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104 e = events[instance]
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105 print format_string % tuple(get_column(h, e) for h in headers)
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106
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107 if __name__ == "__main__":
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108 import boto
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109 from optparse import OptionParser
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110 from boto.ec2 import regions
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111
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112 parser = OptionParser(version=VERSION, usage=usage)
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113 parser.add_option("-a", "--all", help="check all regions", dest="all", default=False,action="store_true")
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114 parser.add_option("-r", "--region", help="region to check (default us-east-1)", dest="region", default="us-east-1")
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115 parser.add_option("-H", "--headers", help="Set headers (use 'T:tagname' for including tags)", default=None, action="store", dest="headers", metavar="ID,Zone,Hostname,Code,Description,NotBefore,NotAfter,T:Name")
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116 parser.add_option("-S", "--sort", help="Header for sort order", default=None, action="store", dest="order",metavar="HeaderName")
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117 parser.add_option("-c", "--completed", help="List time fields as \"Completed\" for completed events (Default: false)", default=False, action="store_true", dest="completed")
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118
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119 (options, args) = parser.parse_args()
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120
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121 if options.headers:
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122 headers = tuple(options.headers.split(','))
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123 else:
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124 headers = ('ID', 'Zone', 'Hostname', 'Code', 'NotBefore', 'NotAfter')
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125
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126 if options.order:
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127 order = options.order
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128 else:
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129 order = 'ID'
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130
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131 if options.all:
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132 for r in regions():
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133 print "Region %s" % r.name
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134 list(r, headers, order, options.completed)
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135 else:
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136 # Connect the region
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137 for r in regions():
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138 if r.name == options.region:
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139 region = r
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140 break
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141 else:
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142 print "Region %s not found." % options.region
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143 sys.exit(1)
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144
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145 list(r, headers, order, options.completed)