Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/idna/intranges.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
---|---|
date | Sat, 02 May 2020 07:14:21 -0400 |
parents | |
children |
rev | line source |
---|---|
0
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
1 """ |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
2 Given a list of integers, made up of (hopefully) a small number of long runs |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
3 of consecutive integers, compute a representation of the form |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
4 ((start1, end1), (start2, end2) ...). Then answer the question "was x present |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
5 in the original list?" in time O(log(# runs)). |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
6 """ |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
7 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
8 import bisect |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
9 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
10 def intranges_from_list(list_): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
11 """Represent a list of integers as a sequence of ranges: |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
12 ((start_0, end_0), (start_1, end_1), ...), such that the original |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
13 integers are exactly those x such that start_i <= x < end_i for some i. |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
14 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
15 Ranges are encoded as single integers (start << 32 | end), not as tuples. |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
16 """ |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
17 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
18 sorted_list = sorted(list_) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
19 ranges = [] |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
20 last_write = -1 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
21 for i in range(len(sorted_list)): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
22 if i+1 < len(sorted_list): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
23 if sorted_list[i] == sorted_list[i+1]-1: |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
24 continue |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
25 current_range = sorted_list[last_write+1:i+1] |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
26 ranges.append(_encode_range(current_range[0], current_range[-1] + 1)) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
27 last_write = i |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
28 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
29 return tuple(ranges) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
30 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
31 def _encode_range(start, end): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
32 return (start << 32) | end |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
33 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
34 def _decode_range(r): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
35 return (r >> 32), (r & ((1 << 32) - 1)) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
36 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
37 |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
38 def intranges_contain(int_, ranges): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
39 """Determine if `int_` falls into one of the ranges in `ranges`.""" |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
40 tuple_ = _encode_range(int_, 0) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
41 pos = bisect.bisect_left(ranges, tuple_) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
42 # we could be immediately ahead of a tuple (start, end) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
43 # with start < int_ <= end |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
44 if pos > 0: |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
45 left, right = _decode_range(ranges[pos-1]) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
46 if left <= int_ < right: |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
47 return True |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
48 # or we could be immediately behind a tuple (int_, end) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
49 if pos < len(ranges): |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
50 left, _ = _decode_range(ranges[pos]) |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
51 if left == int_: |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
52 return True |
26e78fe6e8c4
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
shellac
parents:
diff
changeset
|
53 return False |