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annotate env/lib/python3.7/site-packages/cwltool/schemas/v1.1/index.md @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
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1 # Common Workflow Language Specifications, v1.1
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2
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3 The CWL specifications are divided up into several documents.
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4
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5 The [User Guide](http://www.commonwl.org/user_guide/) provides a gentle
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6 introduction to writing CWL command line tools and workflows.
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7
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8 The [Command Line Tool Description Specification](CommandLineTool.html)
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9 specifies the document schema and execution semantics for wrapping and
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10 executing command line tools.
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11
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12 The [Workflow Description Specification](Workflow.html) specifies the document
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13 schema and execution semantics for composing workflows from components such as
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14 command line tools and other workflows.
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15
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16 The
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17 [Semantic Annotations for Linked Avro Data (SALAD) Specification](SchemaSalad.html)
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18 specifies the preprocessing steps that must be applied when loading CWL
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19 documents and the schema language used to write the above specifications.
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20
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21 Also available are inheritance graphs (as SVG images) for the [Schema Salad object model](salad.svg) and the [CWL object model](cwl.svg).
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22
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23 # Running the CWL conformance tests
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24
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25 Install a CWL runner of your choice. The reference runner can be installed as
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26 the default runner by doing:
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27 ```
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28 pip install cwlref-runner
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29 ```
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30
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31 Install the CWL test parser:
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32 ```
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33 pip install cwltest
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34 ```
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35 You may need to activate a virtualenv first, or do a local install by adding `--user` after `install` above.
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36
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37 From within a copy of [this repository](https://github.com/common-workflow-language/cwl-v1.1) (e.g. cwl-v1.1) execute the main test script
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38 ```
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39 ./run_test.sh
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40 ```
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41
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42 If the CWL runner isn't installed as `cwl-runner` then you can specify the name for the runner:
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43 ```
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44 ./run_test.sh RUNNER=cwltool
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45 ```
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46
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47 You can also specify additional options that are specific for the particular CWL runner you are using.
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48 For example, with CWL reference runner you can turn on parallel execution mode:
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49 ```
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50 ./run_test.sh RUNNER=cwltool EXTRA=--parallel
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51 ```
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52
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53 This can be combined with launching more than one CWL conformance test at once with `-j`:
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54 ```
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55 ./run_test.sh -j4 RUNNER=cwltool EXTRA=--parallel
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56 ```
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57
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58 You can list all the tests
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59 ```
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60 ./run_test.sh -l
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61 ```
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62
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63 You can run a particular test
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64 ```
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65 ./run_test.sh -n23
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66 ```
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67
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68
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69 If you are running tests for an unreleased CWL version use the `--enable-dev` flag:
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70 ```
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71 ./run_test.sh EXTRA=--enable-dev
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72 ```
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73
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74
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75 For details of options you can pass to the test script, do:
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76 ```
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77 ./run_test.sh --help
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78 ```
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79
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80 The full test suite takes about 10 minutes to run