Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/cwltool/tests/wf/revtool.cwl @ 2:6af9afd405e9 draft
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author | shellac |
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date | Thu, 14 May 2020 14:56:58 -0400 |
parents | 26e78fe6e8c4 |
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1 #!/usr/bin/env cwl-runner |
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2 # |
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3 # Simplest example command line program wrapper for the Unix tool "rev". |
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4 # |
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5 class: CommandLineTool |
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6 cwlVersion: v1.0 |
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7 doc: "Reverse each line using the `rev` command" |
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8 $schemas: |
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9 - empty.ttl |
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10 |
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11 # The "inputs" array defines the structure of the input object that describes |
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12 # the inputs to the underlying program. Here, there is one input field |
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13 # defined that will be called "input" and will contain a "File" object. |
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14 # |
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15 # The input binding indicates that the input value should be turned into a |
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16 # command line argument. In this example inputBinding is an empty object, |
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17 # which indicates that the file name should be added to the command line at |
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18 # a default location. |
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19 inputs: |
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20 revtool_input: |
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21 type: File |
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22 inputBinding: {} |
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23 |
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24 # The "outputs" array defines the structure of the output object that |
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25 # describes the outputs of the underlying program. Here, there is one |
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26 # output field defined that will be called "output", must be a "File" type, |
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27 # and after the program executes, the output value will be the file |
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28 # output.txt in the designated output directory. |
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29 outputs: |
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30 revtool_output: |
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31 type: File |
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32 outputBinding: |
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33 glob: output.txt |
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34 |
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35 # The actual program to execute. |
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36 baseCommand: rev |
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37 |
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38 # Specify that the standard output stream must be redirected to a file called |
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39 # output.txt in the designated output directory. |
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40 stdout: output.txt |