Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/planemo/test/results.py @ 2:6af9afd405e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
children
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0
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1 """Describes results.
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2
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3 Is a JSON.
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4 """
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5 import json
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6 import os
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7
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8 from planemo.io import error
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9
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10
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11 class StructuredData(object):
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12 """Abstraction around a simple data structure describing test results."""
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13
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14 def __init__(self, json_path=None, data=None):
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15 """Create a :class:`StructuredData` from a JSON file."""
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16 def data_error():
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17 error("An invalid JSON for structured test result data - "
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18 "summary information and planemo reports will be "
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19 "incorrect.")
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20
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21 self.json_path = json_path
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22 structured_data = {}
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23 structured_data_tests = {}
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24 if json_path and os.path.exists(json_path) and data is None:
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25 try:
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26 with open(json_path, "r") as output_json_f:
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27 data = json.load(output_json_f)
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28 except Exception:
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29 data_error()
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30 try:
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31 structured_data = data
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32 structured_data_tests = structured_data["tests"]
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33 except Exception:
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34 data_error()
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35
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36 self.structured_data = structured_data
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37 self.structured_data_tests = structured_data_tests
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38 structured_data_by_id = {}
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39 for test in self.structured_data_tests:
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40 structured_data_by_id[test["id"]] = test["data"]
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41 self.structured_data_by_id = structured_data_by_id
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42 self.has_details = "summary" in structured_data
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43 if self.has_details:
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44 self.read_summary()
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45
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46 def update(self):
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47 """Write out an updated version of this data structure to supplied json path."""
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48 with open(self.json_path, "w") as out_f:
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49 json.dump(self.structured_data, out_f)
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50
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51 def set_exit_code(self, exit_code):
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52 """Set the exit_code for the this test."""
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53 self.structured_data["exit_code"] = exit_code
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54
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55 def calculate_summary_data_if_needed(self):
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56 if "summary" not in self.structured_data:
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57 self.calculate_summary_data()
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58
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59 def calculate_summary_data(self):
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60 """Use full details on individual test data to update structured data with summary info."""
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61 num_tests = 0
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62 num_failures = 0
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63 num_skips = 0
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64 num_errors = 0
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65
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66 for test in self.structured_data_tests:
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67 test_data = get_dict_value("data", test)
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68 status = get_dict_value("status", test_data)
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69 num_tests += 1
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70 if status == "skip":
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71 num_skips += 1
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72 elif status == "failure":
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73 num_failures += 1
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74 elif status == "error":
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75 num_errors += 1
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76 elif status != "success":
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77 raise Exception("Unknown test status encountered [%s]" % status)
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78
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79 summary = {}
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80 summary["num_tests"] = num_tests
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81 summary["num_failures"] = num_failures
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82 summary["num_skips"] = num_skips
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83 summary["num_errors"] = num_errors
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84 self.structured_data["summary"] = summary
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85 self.read_summary()
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86
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87 def read_summary(self):
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88 """Read summary data into properties on this class."""
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89 summary = self.structured_data["summary"]
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90 num_tests = summary["num_tests"]
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91 num_failures = summary["num_failures"]
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92 num_skips = summary["num_skips"]
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93 num_errors = summary["num_errors"]
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94
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95 self.num_tests = num_tests
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96 self.num_problems = num_skips + num_errors + num_failures
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97
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98 self.exit_code = self.structured_data.get("exit_code", None)
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99
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100 @property
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101 def failed_ids(self):
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102 """Find set of IDs for failed tests."""
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103 ids = set([])
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104 for test_data in self.structured_data_tests:
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105 if test_data["data"]["status"] == "success":
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106 continue
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107 test_case = test_data["id"].replace(".test_toolbox.", ".test_toolbox:")
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108 ids.add(test_case)
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109 return ids
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110
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111
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112 def get_dict_value(key, data):
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113 """Return data[key] with improved KeyError."""
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114 try:
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115 return data[key]
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116 except (KeyError, TypeError):
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117 raise KeyError("No key [%s] in [%s]" % (key, data))
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118
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119
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120 __all__ = (
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121 "StructuredData",
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122 "get_dict_value",
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123 )