Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/rdflib/namespace.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
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1 from rdflib.py3compat import format_doctest_out |
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2 |
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3 __doc__ = format_doctest_out(""" |
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4 =================== |
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5 Namespace Utilities |
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6 =================== |
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7 |
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8 RDFLib provides mechanisms for managing Namespaces. |
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9 |
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10 In particular, there is a :class:`~rdflib.namespace.Namespace` class |
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11 that takes as its argument the base URI of the namespace. |
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12 |
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13 .. code-block:: pycon |
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14 |
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15 >>> from rdflib.namespace import Namespace |
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16 >>> owl = Namespace('http://www.w3.org/2002/07/owl#') |
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17 |
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18 Fully qualified URIs in the namespace can be constructed either by attribute |
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19 or by dictionary access on Namespace instances: |
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20 |
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21 .. code-block:: pycon |
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22 |
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23 >>> owl.seeAlso |
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24 rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') |
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25 >>> owl['seeAlso'] |
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26 rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') |
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27 |
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28 |
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29 Automatic handling of unknown predicates |
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30 ----------------------------------------- |
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31 |
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32 As a programming convenience, a namespace binding is automatically |
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33 created when :class:`rdflib.term.URIRef` predicates are added to the graph. |
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34 |
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35 Importable namespaces |
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36 ----------------------- |
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37 |
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38 The following namespaces are available by directly importing from rdflib: |
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39 |
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40 * RDF |
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41 * RDFS |
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42 * OWL |
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43 * XSD |
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44 * FOAF |
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45 * SKOS |
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46 * DOAP |
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47 * DC |
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48 * DCTERMS |
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49 * VOID |
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50 |
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51 .. code-block:: pycon |
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52 |
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53 >>> from rdflib import OWL |
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54 >>> OWL.seeAlso |
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55 rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') |
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56 |
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57 """) |
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58 |
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59 import logging |
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60 logger = logging.getLogger(__name__) |
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61 |
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62 import os |
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63 |
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64 from urllib.parse import urljoin, urldefrag |
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65 from urllib.request import pathname2url |
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66 |
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67 from rdflib.term import URIRef, Variable, _XSD_PFX, _is_valid_uri |
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68 |
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69 __all__ = [ |
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70 'is_ncname', 'split_uri', 'Namespace', |
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71 'ClosedNamespace', 'NamespaceManager', |
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72 'XMLNS', 'RDF', 'RDFS', 'XSD', 'OWL', |
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73 'SKOS', 'DOAP', 'FOAF', 'DC', 'DCTERMS', 'VOID'] |
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74 |
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75 |
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76 class Namespace(str): |
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77 |
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78 __doc__ = format_doctest_out(""" |
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79 Utility class for quickly generating URIRefs with a common prefix |
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80 |
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81 >>> from rdflib import Namespace |
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82 >>> n = Namespace("http://example.org/") |
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83 >>> n.Person # as attribute |
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84 rdflib.term.URIRef(%(u)s'http://example.org/Person') |
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85 >>> n['first-name'] # as item - for things that are not valid python identifiers |
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86 rdflib.term.URIRef(%(u)s'http://example.org/first-name') |
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87 |
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88 """) |
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89 |
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90 |
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91 def __new__(cls, value): |
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92 try: |
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93 rt = str.__new__(cls, value) |
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94 except UnicodeDecodeError: |
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95 rt = str.__new__(cls, value, 'utf-8') |
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96 return rt |
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97 |
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98 |
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99 @property |
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100 def title(self): |
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101 return URIRef(self + 'title') |
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102 |
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103 def term(self, name): |
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104 # need to handle slices explicitly because of __getitem__ override |
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105 return URIRef(self + (name if isinstance(name, str) else '')) |
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106 |
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107 def __getitem__(self, key, default=None): |
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108 return self.term(key) |
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109 |
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110 def __getattr__(self, name): |
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111 if name.startswith("__"): # ignore any special Python names! |
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112 raise AttributeError |
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113 else: |
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114 return self.term(name) |
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115 |
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116 def __repr__(self): |
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117 return "Namespace(%s)"%str.__repr__(self) |
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118 |
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119 |
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120 class URIPattern(str): |
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121 |
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122 __doc__ = format_doctest_out(""" |
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123 Utility class for creating URIs according to some pattern |
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124 This supports either new style formatting with .format |
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125 or old-style with %% operator |
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126 |
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127 >>> u=URIPattern("http://example.org/%%s/%%d/resource") |
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128 >>> u%%('books', 12345) |
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129 rdflib.term.URIRef(%(u)s'http://example.org/books/12345/resource') |
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130 |
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131 """) |
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132 |
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133 def __new__(cls, value): |
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134 try: |
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135 rt = str.__new__(cls, value) |
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136 except UnicodeDecodeError: |
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137 rt = str.__new__(cls, value, 'utf-8') |
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138 return rt |
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139 |
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140 def __mod__(self, *args, **kwargs): |
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141 return URIRef(str(self).__mod__(*args, **kwargs)) |
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142 |
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143 def format(self, *args, **kwargs): |
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144 return URIRef(str.format(self, *args, **kwargs)) |
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145 |
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146 def __repr__(self): |
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147 return "URIPattern(%r)"%str.__repr__(self) |
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148 |
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149 |
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150 |
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151 class ClosedNamespace(object): |
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152 """ |
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153 A namespace with a closed list of members |
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154 |
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155 Trying to create terms not listen is an error |
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156 """ |
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157 |
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158 def __init__(self, uri, terms): |
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159 self.uri = uri |
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160 self.__uris = {} |
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161 for t in terms: |
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162 self.__uris[t] = URIRef(self.uri + t) |
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163 |
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164 def term(self, name): |
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165 uri = self.__uris.get(name) |
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166 if uri is None: |
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167 raise Exception( |
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168 "term '%s' not in namespace '%s'" % (name, self.uri)) |
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169 else: |
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170 return uri |
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171 |
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172 def __getitem__(self, key, default=None): |
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173 return self.term(key) |
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174 |
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175 def __getattr__(self, name): |
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176 if name.startswith("__"): # ignore any special Python names! |
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177 raise AttributeError |
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178 else: |
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179 return self.term(name) |
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180 |
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181 def __str__(self): |
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182 return str(self.uri) |
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183 |
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184 def __repr__(self): |
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185 return """rdf.namespace.ClosedNamespace('%s')""" % str(self.uri) |
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186 |
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187 |
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188 class _RDFNamespace(ClosedNamespace): |
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189 """ |
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190 Closed namespace for RDF terms |
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191 """ |
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192 def __init__(self): |
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193 super(_RDFNamespace, self).__init__( |
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194 URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#"), |
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195 terms=[ |
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196 # Syntax Names |
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197 "RDF", "Description", "ID", "about", "parseType", |
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198 "resource", "li", "nodeID", "datatype", |
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199 |
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200 # RDF Classes |
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201 "Seq", "Bag", "Alt", "Statement", "Property", |
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202 "List", "PlainLiteral", |
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203 |
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204 # RDF Properties |
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205 "subject", "predicate", "object", "type", |
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206 "value", "first", "rest", |
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207 # and _n where n is a non-negative integer |
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208 |
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209 # RDF Resources |
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210 "nil", |
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211 |
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212 # Added in RDF 1.1 |
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213 "XMLLiteral", "HTML", "langString"] |
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214 ) |
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215 |
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216 def term(self, name): |
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217 try: |
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218 i = int(name) |
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219 return URIRef("%s_%s" % (self.uri, i)) |
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220 except ValueError: |
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221 return super(_RDFNamespace, self).term(name) |
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222 |
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223 RDF = _RDFNamespace() |
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224 |
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225 RDFS = ClosedNamespace( |
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226 uri=URIRef("http://www.w3.org/2000/01/rdf-schema#"), |
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227 terms=[ |
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228 "Resource", "Class", "subClassOf", "subPropertyOf", "comment", "label", |
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229 "domain", "range", "seeAlso", "isDefinedBy", "Literal", "Container", |
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230 "ContainerMembershipProperty", "member", "Datatype"] |
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231 ) |
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232 |
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233 OWL = Namespace('http://www.w3.org/2002/07/owl#') |
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234 |
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235 XSD = Namespace(_XSD_PFX) |
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236 |
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237 SKOS = Namespace('http://www.w3.org/2004/02/skos/core#') |
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238 DOAP = Namespace('http://usefulinc.com/ns/doap#') |
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239 FOAF = Namespace('http://xmlns.com/foaf/0.1/') |
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240 DC = Namespace('http://purl.org/dc/elements/1.1/') |
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241 DCTERMS = Namespace('http://purl.org/dc/terms/') |
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242 VOID = Namespace('http://rdfs.org/ns/void#') |
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243 |
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244 |
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245 |
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246 class NamespaceManager(object): |
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247 """ |
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248 |
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249 Class for managing prefix => namespace mappings |
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250 |
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251 Sample usage from FuXi ... |
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252 |
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253 .. code-block:: python |
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254 |
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255 ruleStore = N3RuleStore(additionalBuiltins=additionalBuiltins) |
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256 nsMgr = NamespaceManager(Graph(ruleStore)) |
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257 ruleGraph = Graph(ruleStore,namespace_manager=nsMgr) |
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258 |
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259 |
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260 and ... |
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261 |
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262 .. code-block:: pycon |
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263 |
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264 >>> import rdflib |
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265 >>> from rdflib import Graph |
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266 >>> from rdflib.namespace import Namespace, NamespaceManager |
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267 >>> exNs = Namespace('http://example.com/') |
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268 >>> namespace_manager = NamespaceManager(Graph()) |
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269 >>> namespace_manager.bind('ex', exNs, override=False) |
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270 >>> g = Graph() |
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271 >>> g.namespace_manager = namespace_manager |
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272 >>> all_ns = [n for n in g.namespace_manager.namespaces()] |
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273 >>> assert ('ex', rdflib.term.URIRef('http://example.com/')) in all_ns |
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274 >>> |
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275 |
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276 """ |
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277 def __init__(self, graph): |
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278 self.graph = graph |
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279 self.__cache = {} |
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280 self.__log = None |
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281 self.bind("xml", "http://www.w3.org/XML/1998/namespace") |
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282 self.bind("rdf", RDF) |
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283 self.bind("rdfs", RDFS) |
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284 self.bind("xsd", XSD) |
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285 |
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286 def reset(self): |
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287 self.__cache = {} |
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288 |
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289 def __get_store(self): |
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290 return self.graph.store |
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291 store = property(__get_store) |
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292 |
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293 def qname(self, uri): |
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294 prefix, namespace, name = self.compute_qname(uri) |
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295 if prefix == "": |
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296 return name |
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297 else: |
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298 return ":".join((prefix, name)) |
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299 |
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300 def normalizeUri(self, rdfTerm): |
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301 """ |
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302 Takes an RDF Term and 'normalizes' it into a QName (using the |
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303 registered prefix) or (unlike compute_qname) the Notation 3 |
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304 form for URIs: <...URI...> |
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305 """ |
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306 try: |
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307 namespace, name = split_uri(rdfTerm) |
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308 namespace = URIRef(str(namespace)) |
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309 except: |
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310 if isinstance(rdfTerm, Variable): |
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311 return "?%s" % rdfTerm |
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312 else: |
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313 return "<%s>" % rdfTerm |
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314 prefix = self.store.prefix(namespace) |
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315 if prefix is None and isinstance(rdfTerm, Variable): |
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316 return "?%s" % rdfTerm |
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317 elif prefix is None: |
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318 return "<%s>" % rdfTerm |
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319 else: |
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320 qNameParts = self.compute_qname(rdfTerm) |
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321 return ':'.join([qNameParts[0], qNameParts[-1]]) |
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322 |
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323 def compute_qname(self, uri, generate=True): |
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324 |
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325 if not _is_valid_uri(uri): |
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326 raise Exception('"%s" does not look like a valid URI, I cannot serialize this. Perhaps you wanted to urlencode it?'%uri) |
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327 |
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328 |
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329 if not uri in self.__cache: |
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330 namespace, name = split_uri(uri) |
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331 namespace = URIRef(namespace) |
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332 prefix = self.store.prefix(namespace) |
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333 if prefix is None: |
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334 if not generate: |
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335 raise Exception( |
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336 "No known prefix for %s and generate=False") |
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337 num = 1 |
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338 while 1: |
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339 prefix = "ns%s" % num |
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340 if not self.store.namespace(prefix): |
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341 break |
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342 num += 1 |
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343 self.bind(prefix, namespace) |
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344 self.__cache[uri] = (prefix, namespace, name) |
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345 return self.__cache[uri] |
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346 |
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347 def bind(self, prefix, namespace, override=True, replace=False): |
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348 |
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349 """bind a given namespace to the prefix |
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350 |
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351 if override, rebind, even if the given namespace is already |
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352 bound to another prefix. |
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353 |
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354 if replace, replace any existing prefix with the new namespace |
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355 |
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356 """ |
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357 |
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358 namespace = URIRef(str(namespace)) |
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359 # When documenting explain that override only applies in what cases |
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360 if prefix is None: |
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361 prefix = '' |
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362 bound_namespace = self.store.namespace(prefix) |
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363 # Check if the bound_namespace contains a URI |
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364 # and if so convert it into a URIRef for comparison |
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365 # This is to prevent duplicate namespaces with the |
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366 # same URI |
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367 if bound_namespace: |
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368 bound_namespace = URIRef(bound_namespace) |
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369 if bound_namespace and bound_namespace != namespace: |
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370 |
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371 if replace: |
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372 self.store.bind(prefix, namespace) |
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373 return |
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374 |
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375 # prefix already in use for different namespace |
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376 # |
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377 # append number to end of prefix until we find one |
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378 # that's not in use. |
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379 if not prefix: |
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380 prefix = "default" |
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381 num = 1 |
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382 while 1: |
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383 new_prefix = "%s%s" % (prefix, num) |
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384 tnamespace = self.store.namespace(new_prefix) |
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385 if tnamespace and namespace == URIRef(tnamespace): |
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386 # the prefix is already bound to the correct |
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387 # namespace |
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388 return |
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389 if not self.store.namespace(new_prefix): |
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390 break |
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391 num += 1 |
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392 self.store.bind(new_prefix, namespace) |
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393 else: |
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394 bound_prefix = self.store.prefix(namespace) |
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395 if bound_prefix is None: |
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396 self.store.bind(prefix, namespace) |
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397 elif bound_prefix == prefix: |
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398 pass # already bound |
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399 else: |
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400 if override or bound_prefix.startswith("_"): # or a generated |
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401 # prefix |
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402 self.store.bind(prefix, namespace) |
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403 |
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404 def namespaces(self): |
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405 for prefix, namespace in self.store.namespaces(): |
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406 namespace = URIRef(namespace) |
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407 yield prefix, namespace |
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408 |
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409 def absolutize(self, uri, defrag=1): |
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410 base = urljoin("file:", pathname2url(os.getcwd())) |
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411 result = urljoin("%s/" % base, uri, allow_fragments=not defrag) |
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412 if defrag: |
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413 result = urldefrag(result)[0] |
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414 if not defrag: |
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415 if uri and uri[-1] == "#" and result[-1] != "#": |
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416 result = "%s#" % result |
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417 return URIRef(result) |
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418 |
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419 # From: http://www.w3.org/TR/REC-xml#NT-CombiningChar |
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420 # |
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421 # * Name start characters must have one of the categories Ll, Lu, Lo, |
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422 # Lt, Nl. |
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423 # |
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424 # * Name characters other than Name-start characters must have one of |
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425 # the categories Mc, Me, Mn, Lm, or Nd. |
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426 # |
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427 # * Characters in the compatibility area (i.e. with character code |
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428 # greater than #xF900 and less than #xFFFE) are not allowed in XML |
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429 # names. |
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430 # |
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431 # * Characters which have a font or compatibility decomposition |
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432 # (i.e. those with a "compatibility formatting tag" in field 5 of the |
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433 # database -- marked by field 5 beginning with a "<") are not allowed. |
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434 # |
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435 # * The following characters are treated as name-start characters rather |
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436 # than name characters, because the property file classifies them as |
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437 # Alphabetic: [#x02BB-#x02C1], #x0559, #x06E5, #x06E6. |
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438 # |
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439 # * Characters #x20DD-#x20E0 are excluded (in accordance with Unicode |
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440 # 2.0, section 5.14). |
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441 # |
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442 # * Character #x00B7 is classified as an extender, because the property |
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443 # list so identifies it. |
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444 # |
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445 # * Character #x0387 is added as a name character, because #x00B7 is its |
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446 # canonical equivalent. |
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447 # |
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448 # * Characters ':' and '_' are allowed as name-start characters. |
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449 # |
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450 # * Characters '-' and '.' are allowed as name characters. |
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451 |
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452 from unicodedata import category |
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453 |
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454 NAME_START_CATEGORIES = ["Ll", "Lu", "Lo", "Lt", "Nl"] |
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455 NAME_CATEGORIES = NAME_START_CATEGORIES + ["Mc", "Me", "Mn", "Lm", "Nd"] |
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456 ALLOWED_NAME_CHARS = ["\u00B7", "\u0387", "-", ".", "_"] |
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457 |
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458 # http://www.w3.org/TR/REC-xml-names/#NT-NCName |
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459 # [4] NCName ::= (Letter | '_') (NCNameChar)* /* An XML Name, minus |
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460 # the ":" */ |
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461 # [5] NCNameChar ::= Letter | Digit | '.' | '-' | '_' | CombiningChar |
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462 # | Extender |
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463 |
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464 |
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465 def is_ncname(name): |
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466 first = name[0] |
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467 if first == "_" or category(first) in NAME_START_CATEGORIES: |
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468 for i in range(1, len(name)): |
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469 c = name[i] |
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470 if not category(c) in NAME_CATEGORIES: |
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471 if c in ALLOWED_NAME_CHARS: |
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472 continue |
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473 return 0 |
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474 # if in compatibility area |
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475 # if decomposition(c)!='': |
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476 # return 0 |
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477 |
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478 return 1 |
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479 else: |
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480 return 0 |
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481 |
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482 XMLNS = "http://www.w3.org/XML/1998/namespace" |
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483 |
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484 |
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485 def split_uri(uri): |
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486 if uri.startswith(XMLNS): |
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487 return (XMLNS, uri.split(XMLNS)[1]) |
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488 length = len(uri) |
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489 for i in range(0, length): |
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490 c = uri[-i - 1] |
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491 if not category(c) in NAME_CATEGORIES: |
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492 if c in ALLOWED_NAME_CHARS: |
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493 continue |
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494 for j in range(-1 - i, length): |
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495 if category(uri[j]) in NAME_START_CATEGORIES or uri[j] == "_": |
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496 ns = uri[:j] |
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497 if not ns: |
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498 break |
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499 ln = uri[j:] |
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500 return (ns, ln) |
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501 break |
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502 raise Exception("Can't split '%s'" % uri) |