Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/ruamel/yaml/reader.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
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1 # coding: utf-8 |
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2 |
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3 from __future__ import absolute_import |
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4 |
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5 # This module contains abstractions for the input stream. You don't have to |
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6 # looks further, there are no pretty code. |
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7 # |
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8 # We define two classes here. |
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9 # |
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10 # Mark(source, line, column) |
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11 # It's just a record and its only use is producing nice error messages. |
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12 # Parser does not use it for any other purposes. |
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13 # |
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14 # Reader(source, data) |
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15 # Reader determines the encoding of `data` and converts it to unicode. |
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16 # Reader provides the following methods and attributes: |
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17 # reader.peek(length=1) - return the next `length` characters |
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18 # reader.forward(length=1) - move the current position to `length` |
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19 # characters. |
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20 # reader.index - the number of the current character. |
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21 # reader.line, stream.column - the line and the column of the current |
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22 # character. |
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23 |
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24 import codecs |
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25 |
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26 from ruamel.yaml.error import YAMLError, FileMark, StringMark, YAMLStreamError |
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27 from ruamel.yaml.compat import text_type, binary_type, PY3, UNICODE_SIZE |
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28 from ruamel.yaml.util import RegExp |
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29 |
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30 if False: # MYPY |
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31 from typing import Any, Dict, Optional, List, Union, Text, Tuple, Optional # NOQA |
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32 # from ruamel.yaml.compat import StreamTextType # NOQA |
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33 |
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34 __all__ = ['Reader', 'ReaderError'] |
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35 |
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36 |
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37 class ReaderError(YAMLError): |
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38 def __init__(self, name, position, character, encoding, reason): |
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39 # type: (Any, Any, Any, Any, Any) -> None |
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40 self.name = name |
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41 self.character = character |
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42 self.position = position |
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43 self.encoding = encoding |
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44 self.reason = reason |
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45 |
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46 def __str__(self): |
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47 # type: () -> str |
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48 if isinstance(self.character, binary_type): |
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49 return "'%s' codec can't decode byte #x%02x: %s\n" ' in "%s", position %d' % ( |
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50 self.encoding, |
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51 ord(self.character), |
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52 self.reason, |
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53 self.name, |
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54 self.position, |
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55 ) |
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56 else: |
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57 return 'unacceptable character #x%04x: %s\n' ' in "%s", position %d' % ( |
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58 self.character, |
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59 self.reason, |
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60 self.name, |
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61 self.position, |
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62 ) |
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63 |
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64 |
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65 class Reader(object): |
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66 # Reader: |
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67 # - determines the data encoding and converts it to a unicode string, |
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68 # - checks if characters are in allowed range, |
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69 # - adds '\0' to the end. |
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70 |
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71 # Reader accepts |
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72 # - a `str` object (PY2) / a `bytes` object (PY3), |
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73 # - a `unicode` object (PY2) / a `str` object (PY3), |
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74 # - a file-like object with its `read` method returning `str`, |
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75 # - a file-like object with its `read` method returning `unicode`. |
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76 |
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77 # Yeah, it's ugly and slow. |
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78 |
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79 def __init__(self, stream, loader=None): |
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80 # type: (Any, Any) -> None |
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81 self.loader = loader |
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82 if self.loader is not None and getattr(self.loader, '_reader', None) is None: |
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83 self.loader._reader = self |
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84 self.reset_reader() |
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85 self.stream = stream # type: Any # as .read is called |
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86 |
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87 def reset_reader(self): |
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88 # type: () -> None |
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89 self.name = None # type: Any |
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90 self.stream_pointer = 0 |
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91 self.eof = True |
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92 self.buffer = "" |
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93 self.pointer = 0 |
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94 self.raw_buffer = None # type: Any |
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95 self.raw_decode = None |
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96 self.encoding = None # type: Optional[Text] |
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97 self.index = 0 |
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98 self.line = 0 |
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99 self.column = 0 |
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100 |
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101 @property |
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102 def stream(self): |
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103 # type: () -> Any |
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104 try: |
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105 return self._stream |
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106 except AttributeError: |
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107 raise YAMLStreamError('input stream needs to specified') |
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108 |
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109 @stream.setter |
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110 def stream(self, val): |
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111 # type: (Any) -> None |
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112 if val is None: |
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113 return |
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114 self._stream = None |
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115 if isinstance(val, text_type): |
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116 self.name = '<unicode string>' |
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117 self.check_printable(val) |
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118 self.buffer = val + u'\0' # type: ignore |
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119 elif isinstance(val, binary_type): |
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120 self.name = '<byte string>' |
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121 self.raw_buffer = val |
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122 self.determine_encoding() |
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123 else: |
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124 if not hasattr(val, 'read'): |
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125 raise YAMLStreamError('stream argument needs to have a read() method') |
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126 self._stream = val |
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127 self.name = getattr(self.stream, 'name', '<file>') |
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128 self.eof = False |
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129 self.raw_buffer = None |
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130 self.determine_encoding() |
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131 |
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132 def peek(self, index=0): |
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133 # type: (int) -> Text |
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134 try: |
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135 return self.buffer[self.pointer + index] |
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136 except IndexError: |
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137 self.update(index + 1) |
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138 return self.buffer[self.pointer + index] |
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139 |
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140 def prefix(self, length=1): |
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141 # type: (int) -> Any |
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142 if self.pointer + length >= len(self.buffer): |
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143 self.update(length) |
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144 return self.buffer[self.pointer : self.pointer + length] |
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145 |
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146 def forward_1_1(self, length=1): |
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147 # type: (int) -> None |
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148 if self.pointer + length + 1 >= len(self.buffer): |
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149 self.update(length + 1) |
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150 while length != 0: |
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151 ch = self.buffer[self.pointer] |
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152 self.pointer += 1 |
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153 self.index += 1 |
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154 if ch in u'\n\x85\u2028\u2029' or ( |
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155 ch == u'\r' and self.buffer[self.pointer] != u'\n' |
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156 ): |
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157 self.line += 1 |
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158 self.column = 0 |
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159 elif ch != u'\uFEFF': |
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160 self.column += 1 |
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161 length -= 1 |
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162 |
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163 def forward(self, length=1): |
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164 # type: (int) -> None |
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165 if self.pointer + length + 1 >= len(self.buffer): |
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166 self.update(length + 1) |
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167 while length != 0: |
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168 ch = self.buffer[self.pointer] |
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169 self.pointer += 1 |
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170 self.index += 1 |
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171 if ch == u'\n' or (ch == u'\r' and self.buffer[self.pointer] != u'\n'): |
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172 self.line += 1 |
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173 self.column = 0 |
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174 elif ch != u'\uFEFF': |
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175 self.column += 1 |
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176 length -= 1 |
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177 |
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178 def get_mark(self): |
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179 # type: () -> Any |
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180 if self.stream is None: |
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181 return StringMark( |
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182 self.name, self.index, self.line, self.column, self.buffer, self.pointer |
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183 ) |
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184 else: |
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185 return FileMark(self.name, self.index, self.line, self.column) |
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186 |
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187 def determine_encoding(self): |
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188 # type: () -> None |
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189 while not self.eof and (self.raw_buffer is None or len(self.raw_buffer) < 2): |
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190 self.update_raw() |
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191 if isinstance(self.raw_buffer, binary_type): |
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192 if self.raw_buffer.startswith(codecs.BOM_UTF16_LE): |
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193 self.raw_decode = codecs.utf_16_le_decode # type: ignore |
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194 self.encoding = 'utf-16-le' |
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195 elif self.raw_buffer.startswith(codecs.BOM_UTF16_BE): |
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196 self.raw_decode = codecs.utf_16_be_decode # type: ignore |
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197 self.encoding = 'utf-16-be' |
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198 else: |
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199 self.raw_decode = codecs.utf_8_decode # type: ignore |
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200 self.encoding = 'utf-8' |
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201 self.update(1) |
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202 |
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203 if UNICODE_SIZE == 2: |
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204 NON_PRINTABLE = RegExp( |
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205 u'[^\x09\x0A\x0D\x20-\x7E\x85' u'\xA0-\uD7FF' u'\uE000-\uFFFD' u']' |
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206 ) |
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207 else: |
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208 NON_PRINTABLE = RegExp( |
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209 u'[^\x09\x0A\x0D\x20-\x7E\x85' |
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210 u'\xA0-\uD7FF' |
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211 u'\uE000-\uFFFD' |
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212 u'\U00010000-\U0010FFFF' |
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213 u']' |
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214 ) |
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215 |
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216 _printable_ascii = ('\x09\x0A\x0D' + "".join(map(chr, range(0x20, 0x7F)))).encode('ascii') |
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217 |
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218 @classmethod |
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219 def _get_non_printable_ascii(cls, data): # type: ignore |
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220 # type: (Text, bytes) -> Optional[Tuple[int, Text]] |
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221 ascii_bytes = data.encode('ascii') |
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222 non_printables = ascii_bytes.translate(None, cls._printable_ascii) # type: ignore |
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223 if not non_printables: |
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224 return None |
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225 non_printable = non_printables[:1] |
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226 return ascii_bytes.index(non_printable), non_printable.decode('ascii') |
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227 |
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228 @classmethod |
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229 def _get_non_printable_regex(cls, data): |
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230 # type: (Text) -> Optional[Tuple[int, Text]] |
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231 match = cls.NON_PRINTABLE.search(data) |
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232 if not bool(match): |
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233 return None |
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234 return match.start(), match.group() |
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235 |
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236 @classmethod |
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237 def _get_non_printable(cls, data): |
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238 # type: (Text) -> Optional[Tuple[int, Text]] |
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239 try: |
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240 return cls._get_non_printable_ascii(data) # type: ignore |
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241 except UnicodeEncodeError: |
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242 return cls._get_non_printable_regex(data) |
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243 |
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244 def check_printable(self, data): |
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245 # type: (Any) -> None |
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246 non_printable_match = self._get_non_printable(data) |
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247 if non_printable_match is not None: |
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248 start, character = non_printable_match |
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249 position = self.index + (len(self.buffer) - self.pointer) + start |
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250 raise ReaderError( |
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251 self.name, |
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252 position, |
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253 ord(character), |
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254 'unicode', |
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255 'special characters are not allowed', |
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256 ) |
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257 |
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258 def update(self, length): |
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259 # type: (int) -> None |
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260 if self.raw_buffer is None: |
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261 return |
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262 self.buffer = self.buffer[self.pointer :] |
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263 self.pointer = 0 |
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264 while len(self.buffer) < length: |
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265 if not self.eof: |
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266 self.update_raw() |
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267 if self.raw_decode is not None: |
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268 try: |
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269 data, converted = self.raw_decode(self.raw_buffer, 'strict', self.eof) |
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270 except UnicodeDecodeError as exc: |
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271 if PY3: |
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272 character = self.raw_buffer[exc.start] |
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273 else: |
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274 character = exc.object[exc.start] |
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275 if self.stream is not None: |
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276 position = self.stream_pointer - len(self.raw_buffer) + exc.start |
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277 elif self.stream is not None: |
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278 position = self.stream_pointer - len(self.raw_buffer) + exc.start |
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279 else: |
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280 position = exc.start |
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281 raise ReaderError(self.name, position, character, exc.encoding, exc.reason) |
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282 else: |
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283 data = self.raw_buffer |
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284 converted = len(data) |
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285 self.check_printable(data) |
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286 self.buffer += data |
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287 self.raw_buffer = self.raw_buffer[converted:] |
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288 if self.eof: |
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289 self.buffer += '\0' |
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290 self.raw_buffer = None |
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291 break |
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292 |
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293 def update_raw(self, size=None): |
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294 # type: (Optional[int]) -> None |
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295 if size is None: |
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296 size = 4096 if PY3 else 1024 |
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297 data = self.stream.read(size) |
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298 if self.raw_buffer is None: |
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299 self.raw_buffer = data |
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300 else: |
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301 self.raw_buffer += data |
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302 self.stream_pointer += len(data) |
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303 if not data: |
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304 self.eof = True |
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305 |
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306 |
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307 # try: |
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308 # import psyco |
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309 # psyco.bind(Reader) |
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310 # except ImportError: |
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311 # pass |