Mercurial > repos > shellac > guppy_basecaller

annotate env/bin/bundle_image @ 4:79f47841a781 draft

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"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author shellac
date Thu, 14 May 2020 16:47:39 -0400
parents 26e78fe6e8c4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 #!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
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2 from boto.manage.server import Server
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3 if __name__ == "__main__":
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4 from optparse import OptionParser
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5 parser = OptionParser(version="%prog 1.0", usage="Usage: %prog [options] instance-id [instance-id-2]")
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6
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7 # Commands
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8 parser.add_option("-b", "--bucket", help="Destination Bucket", dest="bucket", default=None)
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9 parser.add_option("-p", "--prefix", help="AMI Prefix", dest="prefix", default=None)
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10 parser.add_option("-k", "--key", help="Private Key File", dest="key_file", default=None)
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11 parser.add_option("-c", "--cert", help="Public Certificate File", dest="cert_file", default=None)
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12 parser.add_option("-s", "--size", help="AMI Size", dest="size", default=None)
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13 parser.add_option("-i", "--ssh-key", help="SSH Keyfile", dest="ssh_key", default=None)
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14 parser.add_option("-u", "--user-name", help="SSH Username", dest="uname", default="root")
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15 parser.add_option("-n", "--name", help="Name of Image", dest="name")
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16 (options, args) = parser.parse_args()
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17
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18 for instance_id in args:
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19 try:
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20 s = Server.find(instance_id=instance_id).next()
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21 print "Found old server object"
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22 except StopIteration:
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23 print "New Server Object Created"
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24 s = Server.create_from_instance_id(instance_id, options.name)
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25 assert(s.hostname is not None)
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26 b = s.get_bundler(uname=options.uname)
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27 b.bundle(bucket=options.bucket,prefix=options.prefix,key_file=options.key_file,cert_file=options.cert_file,size=int(options.size),ssh_key=options.ssh_key)