Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/cwltool/tests/wf/nested.cwl @ 4:79f47841a781 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author shellac
date Thu, 14 May 2020 16:47:39 -0400
parents 26e78fe6e8c4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 #!/usr/bin/env cwl-runner
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2
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3 cwlVersion: v1.0
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4 class: Workflow
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5 label: "Nested workflow example"
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6
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7 inputs: []
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8
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9 outputs:
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10 classout:
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11 type: File
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12 outputSource: compile/classout
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13
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14 requirements:
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15 - class: SubworkflowFeatureRequirement
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16
26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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17 steps:
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18 compile:
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19 run: 1st-workflow.cwl
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20 in:
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21 inp:
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22 source: create-tar/tar
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23 ex:
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24 default: "Hello.java"
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25 out: [classout]
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26
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27 create-tar:
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28 requirements:
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29 - class: InitialWorkDirRequirement
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30 listing:
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31 - entryname: Hello.java
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32 entry: |
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33 public class Hello {
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34 public static void main(String[] argv) {
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35 System.out.println("Hello from Java");
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36 }
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37 }
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38 in: []
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39 out: [tar]
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40 run:
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41 class: CommandLineTool
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42 requirements:
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43 - class: ShellCommandRequirement
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44 arguments:
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45 - shellQuote: false
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46 valueFrom: |
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47 date
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48 tar cf hello.tar Hello.java
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49 date
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50 inputs: []
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51 outputs:
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52 tar:
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53 type: File
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54 outputBinding:
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55 glob: "hello.tar"