Mercurial > repos > shellac > guppy_basecaller
annotate env/lib/python3.7/site-packages/docutils/transforms/references.py @ 4:79f47841a781 draft
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author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
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1 # $Id: references.py 8387 2019-09-06 13:16:34Z milde $ |
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2 # Author: David Goodger <goodger@python.org> |
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3 # Copyright: This module has been placed in the public domain. |
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4 |
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5 """ |
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6 Transforms for resolving references. |
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7 """ |
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8 |
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9 __docformat__ = 'reStructuredText' |
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10 |
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11 import sys |
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12 import re |
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13 from docutils import nodes, utils |
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14 from docutils.transforms import TransformError, Transform |
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15 |
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16 |
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17 class PropagateTargets(Transform): |
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18 |
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19 """ |
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20 Propagate empty internal targets to the next element. |
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21 |
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22 Given the following nodes:: |
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23 |
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24 <target ids="internal1" names="internal1"> |
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25 <target anonymous="1" ids="id1"> |
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26 <target ids="internal2" names="internal2"> |
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27 <paragraph> |
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28 This is a test. |
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29 |
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30 PropagateTargets propagates the ids and names of the internal |
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31 targets preceding the paragraph to the paragraph itself:: |
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32 |
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33 <target refid="internal1"> |
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34 <target anonymous="1" refid="id1"> |
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35 <target refid="internal2"> |
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36 <paragraph ids="internal2 id1 internal1" names="internal2 internal1"> |
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37 This is a test. |
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38 """ |
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39 |
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40 default_priority = 260 |
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41 |
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42 def apply(self): |
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43 for target in self.document.traverse(nodes.target): |
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44 # Only block-level targets without reference (like ".. target:"): |
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45 if (isinstance(target.parent, nodes.TextElement) or |
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46 (target.hasattr('refid') or target.hasattr('refuri') or |
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47 target.hasattr('refname'))): |
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48 continue |
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49 assert len(target) == 0, 'error: block-level target has children' |
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50 next_node = target.next_node(ascend=True) |
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51 # Do not move names and ids into Invisibles (we'd lose the |
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52 # attributes) or different Targetables (e.g. footnotes). |
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53 if (next_node is not None and |
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54 ((not isinstance(next_node, nodes.Invisible) and |
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55 not isinstance(next_node, nodes.Targetable)) or |
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56 isinstance(next_node, nodes.target))): |
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57 next_node['ids'].extend(target['ids']) |
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58 next_node['names'].extend(target['names']) |
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59 # Set defaults for next_node.expect_referenced_by_name/id. |
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60 if not hasattr(next_node, 'expect_referenced_by_name'): |
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61 next_node.expect_referenced_by_name = {} |
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62 if not hasattr(next_node, 'expect_referenced_by_id'): |
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63 next_node.expect_referenced_by_id = {} |
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64 for id in target['ids']: |
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65 # Update IDs to node mapping. |
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66 self.document.ids[id] = next_node |
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67 # If next_node is referenced by id ``id``, this |
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68 # target shall be marked as referenced. |
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69 next_node.expect_referenced_by_id[id] = target |
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70 for name in target['names']: |
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71 next_node.expect_referenced_by_name[name] = target |
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72 # If there are any expect_referenced_by_... attributes |
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73 # in target set, copy them to next_node. |
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74 next_node.expect_referenced_by_name.update( |
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75 getattr(target, 'expect_referenced_by_name', {})) |
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76 next_node.expect_referenced_by_id.update( |
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77 getattr(target, 'expect_referenced_by_id', {})) |
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78 # Set refid to point to the first former ID of target |
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79 # which is now an ID of next_node. |
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80 target['refid'] = target['ids'][0] |
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81 # Clear ids and names; they have been moved to |
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82 # next_node. |
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83 target['ids'] = [] |
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84 target['names'] = [] |
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85 self.document.note_refid(target) |
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86 |
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87 |
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88 class AnonymousHyperlinks(Transform): |
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89 |
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90 """ |
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91 Link anonymous references to targets. Given:: |
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92 |
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93 <paragraph> |
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94 <reference anonymous="1"> |
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95 internal |
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96 <reference anonymous="1"> |
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97 external |
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98 <target anonymous="1" ids="id1"> |
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99 <target anonymous="1" ids="id2" refuri="http://external"> |
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100 |
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101 Corresponding references are linked via "refid" or resolved via "refuri":: |
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102 |
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103 <paragraph> |
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104 <reference anonymous="1" refid="id1"> |
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105 text |
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106 <reference anonymous="1" refuri="http://external"> |
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107 external |
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108 <target anonymous="1" ids="id1"> |
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109 <target anonymous="1" ids="id2" refuri="http://external"> |
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110 """ |
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111 |
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112 default_priority = 440 |
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113 |
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114 def apply(self): |
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115 anonymous_refs = [] |
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116 anonymous_targets = [] |
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117 for node in self.document.traverse(nodes.reference): |
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118 if node.get('anonymous'): |
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119 anonymous_refs.append(node) |
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120 for node in self.document.traverse(nodes.target): |
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121 if node.get('anonymous'): |
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122 anonymous_targets.append(node) |
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123 if len(anonymous_refs) \ |
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124 != len(anonymous_targets): |
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125 msg = self.document.reporter.error( |
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126 'Anonymous hyperlink mismatch: %s references but %s ' |
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127 'targets.\nSee "backrefs" attribute for IDs.' |
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128 % (len(anonymous_refs), len(anonymous_targets))) |
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129 msgid = self.document.set_id(msg) |
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130 for ref in anonymous_refs: |
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131 prb = nodes.problematic( |
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132 ref.rawsource, ref.rawsource, refid=msgid) |
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133 prbid = self.document.set_id(prb) |
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134 msg.add_backref(prbid) |
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135 ref.replace_self(prb) |
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136 return |
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137 for ref, target in zip(anonymous_refs, anonymous_targets): |
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138 target.referenced = 1 |
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139 while True: |
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140 if target.hasattr('refuri'): |
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141 ref['refuri'] = target['refuri'] |
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142 ref.resolved = 1 |
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143 break |
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144 else: |
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145 if not target['ids']: |
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146 # Propagated target. |
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147 target = self.document.ids[target['refid']] |
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148 continue |
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149 ref['refid'] = target['ids'][0] |
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150 self.document.note_refid(ref) |
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151 break |
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152 |
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153 |
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154 class IndirectHyperlinks(Transform): |
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155 |
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156 """ |
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157 a) Indirect external references:: |
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158 |
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159 <paragraph> |
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160 <reference refname="indirect external"> |
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161 indirect external |
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162 <target id="id1" name="direct external" |
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163 refuri="http://indirect"> |
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164 <target id="id2" name="indirect external" |
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165 refname="direct external"> |
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166 |
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167 The "refuri" attribute is migrated back to all indirect targets |
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168 from the final direct target (i.e. a target not referring to |
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169 another indirect target):: |
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170 |
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171 <paragraph> |
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172 <reference refname="indirect external"> |
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173 indirect external |
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174 <target id="id1" name="direct external" |
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175 refuri="http://indirect"> |
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176 <target id="id2" name="indirect external" |
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177 refuri="http://indirect"> |
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178 |
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179 Once the attribute is migrated, the preexisting "refname" attribute |
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180 is dropped. |
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181 |
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182 b) Indirect internal references:: |
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183 |
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184 <target id="id1" name="final target"> |
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185 <paragraph> |
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186 <reference refname="indirect internal"> |
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187 indirect internal |
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188 <target id="id2" name="indirect internal 2" |
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189 refname="final target"> |
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190 <target id="id3" name="indirect internal" |
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191 refname="indirect internal 2"> |
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192 |
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193 Targets which indirectly refer to an internal target become one-hop |
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194 indirect (their "refid" attributes are directly set to the internal |
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195 target's "id"). References which indirectly refer to an internal |
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196 target become direct internal references:: |
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197 |
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198 <target id="id1" name="final target"> |
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199 <paragraph> |
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200 <reference refid="id1"> |
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201 indirect internal |
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202 <target id="id2" name="indirect internal 2" refid="id1"> |
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203 <target id="id3" name="indirect internal" refid="id1"> |
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204 """ |
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205 |
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206 default_priority = 460 |
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207 |
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208 def apply(self): |
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209 for target in self.document.indirect_targets: |
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210 if not target.resolved: |
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211 self.resolve_indirect_target(target) |
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212 self.resolve_indirect_references(target) |
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213 |
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214 def resolve_indirect_target(self, target): |
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215 refname = target.get('refname') |
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216 if refname is None: |
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217 reftarget_id = target['refid'] |
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218 else: |
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219 reftarget_id = self.document.nameids.get(refname) |
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220 if not reftarget_id: |
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221 # Check the unknown_reference_resolvers |
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222 for resolver_function in \ |
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223 self.document.transformer.unknown_reference_resolvers: |
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224 if resolver_function(target): |
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225 break |
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226 else: |
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227 self.nonexistent_indirect_target(target) |
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228 return |
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229 reftarget = self.document.ids[reftarget_id] |
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230 reftarget.note_referenced_by(id=reftarget_id) |
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231 if isinstance(reftarget, nodes.target) \ |
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232 and not reftarget.resolved and reftarget.hasattr('refname'): |
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233 if hasattr(target, 'multiply_indirect'): |
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234 #and target.multiply_indirect): |
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235 #del target.multiply_indirect |
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236 self.circular_indirect_reference(target) |
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237 return |
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238 target.multiply_indirect = 1 |
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239 self.resolve_indirect_target(reftarget) # multiply indirect |
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240 del target.multiply_indirect |
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241 if reftarget.hasattr('refuri'): |
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242 target['refuri'] = reftarget['refuri'] |
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243 if 'refid' in target: |
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244 del target['refid'] |
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245 elif reftarget.hasattr('refid'): |
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246 target['refid'] = reftarget['refid'] |
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247 self.document.note_refid(target) |
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248 else: |
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249 if reftarget['ids']: |
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250 target['refid'] = reftarget_id |
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251 self.document.note_refid(target) |
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252 else: |
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253 self.nonexistent_indirect_target(target) |
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254 return |
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255 if refname is not None: |
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256 del target['refname'] |
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257 target.resolved = 1 |
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258 |
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259 def nonexistent_indirect_target(self, target): |
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260 if target['refname'] in self.document.nameids: |
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261 self.indirect_target_error(target, 'which is a duplicate, and ' |
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262 'cannot be used as a unique reference') |
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263 else: |
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264 self.indirect_target_error(target, 'which does not exist') |
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265 |
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266 def circular_indirect_reference(self, target): |
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267 self.indirect_target_error(target, 'forming a circular reference') |
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268 |
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269 def indirect_target_error(self, target, explanation): |
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270 naming = '' |
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271 reflist = [] |
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272 if target['names']: |
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273 naming = '"%s" ' % target['names'][0] |
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274 for name in target['names']: |
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275 reflist.extend(self.document.refnames.get(name, [])) |
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276 for id in target['ids']: |
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277 reflist.extend(self.document.refids.get(id, [])) |
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278 if target['ids']: |
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279 naming += '(id="%s")' % target['ids'][0] |
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280 msg = self.document.reporter.error( |
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281 'Indirect hyperlink target %s refers to target "%s", %s.' |
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282 % (naming, target['refname'], explanation), base_node=target) |
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283 msgid = self.document.set_id(msg) |
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284 for ref in utils.uniq(reflist): |
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285 prb = nodes.problematic( |
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286 ref.rawsource, ref.rawsource, refid=msgid) |
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287 prbid = self.document.set_id(prb) |
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288 msg.add_backref(prbid) |
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289 ref.replace_self(prb) |
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290 target.resolved = 1 |
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291 |
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292 def resolve_indirect_references(self, target): |
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293 if target.hasattr('refid'): |
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294 attname = 'refid' |
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295 call_method = self.document.note_refid |
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296 elif target.hasattr('refuri'): |
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297 attname = 'refuri' |
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298 call_method = None |
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299 else: |
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300 return |
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301 attval = target[attname] |
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302 for name in target['names']: |
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303 reflist = self.document.refnames.get(name, []) |
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304 if reflist: |
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305 target.note_referenced_by(name=name) |
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306 for ref in reflist: |
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307 if ref.resolved: |
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308 continue |
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309 del ref['refname'] |
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310 ref[attname] = attval |
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311 if call_method: |
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312 call_method(ref) |
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313 ref.resolved = 1 |
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314 if isinstance(ref, nodes.target): |
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315 self.resolve_indirect_references(ref) |
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316 for id in target['ids']: |
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317 reflist = self.document.refids.get(id, []) |
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318 if reflist: |
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319 target.note_referenced_by(id=id) |
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320 for ref in reflist: |
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321 if ref.resolved: |
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322 continue |
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323 del ref['refid'] |
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324 ref[attname] = attval |
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325 if call_method: |
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326 call_method(ref) |
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327 ref.resolved = 1 |
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328 if isinstance(ref, nodes.target): |
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329 self.resolve_indirect_references(ref) |
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330 |
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331 |
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332 class ExternalTargets(Transform): |
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333 |
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334 """ |
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335 Given:: |
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336 |
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337 <paragraph> |
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338 <reference refname="direct external"> |
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339 direct external |
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340 <target id="id1" name="direct external" refuri="http://direct"> |
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341 |
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342 The "refname" attribute is replaced by the direct "refuri" attribute:: |
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343 |
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344 <paragraph> |
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345 <reference refuri="http://direct"> |
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346 direct external |
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347 <target id="id1" name="direct external" refuri="http://direct"> |
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348 """ |
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349 |
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350 default_priority = 640 |
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351 |
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352 def apply(self): |
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353 for target in self.document.traverse(nodes.target): |
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354 if target.hasattr('refuri'): |
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355 refuri = target['refuri'] |
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356 for name in target['names']: |
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357 reflist = self.document.refnames.get(name, []) |
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358 if reflist: |
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359 target.note_referenced_by(name=name) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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360 for ref in reflist: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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361 if ref.resolved: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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362 continue |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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363 del ref['refname'] |
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364 ref['refuri'] = refuri |
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365 ref.resolved = 1 |
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366 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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367 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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368 class InternalTargets(Transform): |
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369 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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370 default_priority = 660 |
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371 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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372 def apply(self): |
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373 for target in self.document.traverse(nodes.target): |
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374 if not target.hasattr('refuri') and not target.hasattr('refid'): |
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375 self.resolve_reference_ids(target) |
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376 |
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377 def resolve_reference_ids(self, target): |
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378 """ |
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379 Given:: |
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380 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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381 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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382 <reference refname="direct internal"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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383 direct internal |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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384 <target id="id1" name="direct internal"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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385 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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386 The "refname" attribute is replaced by "refid" linking to the target's |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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387 "id":: |
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388 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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389 <paragraph> |
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390 <reference refid="id1"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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391 direct internal |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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392 <target id="id1" name="direct internal"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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393 """ |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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394 for name in target['names']: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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395 refid = self.document.nameids.get(name) |
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396 reflist = self.document.refnames.get(name, []) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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397 if reflist: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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398 target.note_referenced_by(name=name) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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399 for ref in reflist: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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400 if ref.resolved: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
401 continue |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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402 if refid: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
403 del ref['refname'] |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
404 ref['refid'] = refid |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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405 ref.resolved = 1 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
406 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
407 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
408 class Footnotes(Transform): |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
409 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
410 """ |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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411 Assign numbers to autonumbered footnotes, and resolve links to footnotes, |
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|
412 citations, and their references. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
413 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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414 Given the following ``document`` as input:: |
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415 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
416 <document> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
417 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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418 A labeled autonumbered footnote referece: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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419 <footnote_reference auto="1" id="id1" refname="footnote"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
420 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
421 An unlabeled autonumbered footnote referece: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
422 <footnote_reference auto="1" id="id2"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
423 <footnote auto="1" id="id3"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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424 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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425 Unlabeled autonumbered footnote. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
426 <footnote auto="1" id="footnote" name="footnote"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
427 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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428 Labeled autonumbered footnote. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
429 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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430 Auto-numbered footnotes have attribute ``auto="1"`` and no label. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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431 Auto-numbered footnote_references have no reference text (they're |
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432 empty elements). When resolving the numbering, a ``label`` element |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
433 is added to the beginning of the ``footnote``, and reference text |
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434 to the ``footnote_reference``. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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435 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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436 The transformed result will be:: |
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|
437 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
438 <document> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
439 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
440 A labeled autonumbered footnote referece: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
441 <footnote_reference auto="1" id="id1" refid="footnote"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
442 2 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
443 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
444 An unlabeled autonumbered footnote referece: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
445 <footnote_reference auto="1" id="id2" refid="id3"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
446 1 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
447 <footnote auto="1" id="id3" backrefs="id2"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
448 <label> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
449 1 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
450 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
451 Unlabeled autonumbered footnote. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
452 <footnote auto="1" id="footnote" name="footnote" backrefs="id1"> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
453 <label> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
454 2 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
455 <paragraph> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
456 Labeled autonumbered footnote. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
457 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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458 Note that the footnotes are not in the same order as the references. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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|
459 |
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460 The labels and reference text are added to the auto-numbered ``footnote`` |
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461 and ``footnote_reference`` elements. Footnote elements are backlinked to |
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462 their references via "refids" attributes. References are assigned "id" |
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463 and "refid" attributes. |
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464 |
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465 After adding labels and reference text, the "auto" attributes can be |
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466 ignored. |
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467 """ |
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468 |
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469 default_priority = 620 |
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470 |
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471 autofootnote_labels = None |
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472 """Keep track of unlabeled autonumbered footnotes.""" |
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473 |
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474 symbols = [ |
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475 # Entries 1-4 and 6 below are from section 12.51 of |
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476 # The Chicago Manual of Style, 14th edition. |
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477 '*', # asterisk/star |
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478 u'\u2020', # dagger † |
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479 u'\u2021', # double dagger ‡ |
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480 u'\u00A7', # section mark § |
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481 u'\u00B6', # paragraph mark (pilcrow) ¶ |
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482 # (parallels ['||'] in CMoS) |
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483 '#', # number sign |
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484 # The entries below were chosen arbitrarily. |
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485 u'\u2660', # spade suit ♠ |
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486 u'\u2665', # heart suit ♥ |
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487 u'\u2666', # diamond suit ♦ |
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488 u'\u2663', # club suit ♣ |
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489 ] |
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490 |
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491 def apply(self): |
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492 self.autofootnote_labels = [] |
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493 startnum = self.document.autofootnote_start |
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494 self.document.autofootnote_start = self.number_footnotes(startnum) |
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495 self.number_footnote_references(startnum) |
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496 self.symbolize_footnotes() |
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497 self.resolve_footnotes_and_citations() |
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498 |
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499 def number_footnotes(self, startnum): |
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500 """ |
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501 Assign numbers to autonumbered footnotes. |
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502 |
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503 For labeled autonumbered footnotes, copy the number over to |
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504 corresponding footnote references. |
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505 """ |
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506 for footnote in self.document.autofootnotes: |
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507 while True: |
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508 label = str(startnum) |
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509 startnum += 1 |
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510 if label not in self.document.nameids: |
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511 break |
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512 footnote.insert(0, nodes.label('', label)) |
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513 for name in footnote['names']: |
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514 for ref in self.document.footnote_refs.get(name, []): |
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515 ref += nodes.Text(label) |
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516 ref.delattr('refname') |
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517 assert len(footnote['ids']) == len(ref['ids']) == 1 |
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518 ref['refid'] = footnote['ids'][0] |
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519 footnote.add_backref(ref['ids'][0]) |
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520 self.document.note_refid(ref) |
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521 ref.resolved = 1 |
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522 if not footnote['names'] and not footnote['dupnames']: |
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523 footnote['names'].append(label) |
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524 self.document.note_explicit_target(footnote, footnote) |
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525 self.autofootnote_labels.append(label) |
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526 return startnum |
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527 |
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528 def number_footnote_references(self, startnum): |
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529 """Assign numbers to autonumbered footnote references.""" |
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530 i = 0 |
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531 for ref in self.document.autofootnote_refs: |
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532 if ref.resolved or ref.hasattr('refid'): |
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533 continue |
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534 try: |
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535 label = self.autofootnote_labels[i] |
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536 except IndexError: |
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537 msg = self.document.reporter.error( |
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538 'Too many autonumbered footnote references: only %s ' |
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539 'corresponding footnotes available.' |
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540 % len(self.autofootnote_labels), base_node=ref) |
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541 msgid = self.document.set_id(msg) |
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542 for ref in self.document.autofootnote_refs[i:]: |
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543 if ref.resolved or ref.hasattr('refname'): |
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544 continue |
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545 prb = nodes.problematic( |
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546 ref.rawsource, ref.rawsource, refid=msgid) |
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547 prbid = self.document.set_id(prb) |
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548 msg.add_backref(prbid) |
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549 ref.replace_self(prb) |
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550 break |
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551 ref += nodes.Text(label) |
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552 id = self.document.nameids[label] |
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553 footnote = self.document.ids[id] |
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554 ref['refid'] = id |
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555 self.document.note_refid(ref) |
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556 assert len(ref['ids']) == 1 |
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557 footnote.add_backref(ref['ids'][0]) |
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558 ref.resolved = 1 |
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559 i += 1 |
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560 |
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561 def symbolize_footnotes(self): |
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562 """Add symbols indexes to "[*]"-style footnotes and references.""" |
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563 labels = [] |
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564 for footnote in self.document.symbol_footnotes: |
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565 reps, index = divmod(self.document.symbol_footnote_start, |
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566 len(self.symbols)) |
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567 labeltext = self.symbols[index] * (reps + 1) |
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568 labels.append(labeltext) |
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569 footnote.insert(0, nodes.label('', labeltext)) |
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570 self.document.symbol_footnote_start += 1 |
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571 self.document.set_id(footnote) |
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572 i = 0 |
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573 for ref in self.document.symbol_footnote_refs: |
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574 try: |
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575 ref += nodes.Text(labels[i]) |
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576 except IndexError: |
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577 msg = self.document.reporter.error( |
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578 'Too many symbol footnote references: only %s ' |
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579 'corresponding footnotes available.' % len(labels), |
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580 base_node=ref) |
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581 msgid = self.document.set_id(msg) |
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582 for ref in self.document.symbol_footnote_refs[i:]: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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583 if ref.resolved or ref.hasattr('refid'): |
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584 continue |
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585 prb = nodes.problematic( |
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586 ref.rawsource, ref.rawsource, refid=msgid) |
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587 prbid = self.document.set_id(prb) |
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588 msg.add_backref(prbid) |
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589 ref.replace_self(prb) |
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590 break |
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591 footnote = self.document.symbol_footnotes[i] |
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592 assert len(footnote['ids']) == 1 |
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593 ref['refid'] = footnote['ids'][0] |
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594 self.document.note_refid(ref) |
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595 footnote.add_backref(ref['ids'][0]) |
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596 i += 1 |
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597 |
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598 def resolve_footnotes_and_citations(self): |
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599 """ |
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600 Link manually-labeled footnotes and citations to/from their |
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601 references. |
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602 """ |
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603 for footnote in self.document.footnotes: |
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604 for label in footnote['names']: |
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605 if label in self.document.footnote_refs: |
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606 reflist = self.document.footnote_refs[label] |
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607 self.resolve_references(footnote, reflist) |
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608 for citation in self.document.citations: |
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609 for label in citation['names']: |
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610 if label in self.document.citation_refs: |
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611 reflist = self.document.citation_refs[label] |
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612 self.resolve_references(citation, reflist) |
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613 |
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614 def resolve_references(self, note, reflist): |
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615 assert len(note['ids']) == 1 |
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616 id = note['ids'][0] |
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617 for ref in reflist: |
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618 if ref.resolved: |
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619 continue |
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620 ref.delattr('refname') |
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621 ref['refid'] = id |
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622 assert len(ref['ids']) == 1 |
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623 note.add_backref(ref['ids'][0]) |
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624 ref.resolved = 1 |
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625 note.resolved = 1 |
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|
626 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
627 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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628 class CircularSubstitutionDefinitionError(Exception): pass |
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|
629 |
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|
630 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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631 class Substitutions(Transform): |
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632 |
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633 """ |
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634 Given the following ``document`` as input:: |
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|
635 |
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|
636 <document> |
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|
637 <paragraph> |
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|
638 The |
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|
639 <substitution_reference refname="biohazard"> |
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640 biohazard |
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641 symbol is deservedly scary-looking. |
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642 <substitution_definition name="biohazard"> |
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|
643 <image alt="biohazard" uri="biohazard.png"> |
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|
644 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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645 The ``substitution_reference`` will simply be replaced by the |
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|
646 contents of the corresponding ``substitution_definition``. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
647 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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648 The transformed result will be:: |
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|
649 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
650 <document> |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
651 <paragraph> |
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|
652 The |
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|
653 <image alt="biohazard" uri="biohazard.png"> |
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|
654 symbol is deservedly scary-looking. |
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655 <substitution_definition name="biohazard"> |
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656 <image alt="biohazard" uri="biohazard.png"> |
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657 """ |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
658 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
659 default_priority = 220 |
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660 """The Substitutions transform has to be applied very early, before |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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661 `docutils.tranforms.frontmatter.DocTitle` and others.""" |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
662 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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663 def apply(self): |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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664 defs = self.document.substitution_defs |
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665 normed = self.document.substitution_names |
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666 subreflist = list(self.document.traverse(nodes.substitution_reference)) |
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667 nested = {} |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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668 for ref in subreflist: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
669 refname = ref['refname'] |
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670 key = None |
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671 if refname in defs: |
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672 key = refname |
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673 else: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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674 normed_name = refname.lower() |
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675 if normed_name in normed: |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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676 key = normed[normed_name] |
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677 if key is None: |
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678 msg = self.document.reporter.error( |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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679 'Undefined substitution referenced: "%s".' |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
680 % refname, base_node=ref) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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681 msgid = self.document.set_id(msg) |
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682 prb = nodes.problematic( |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
683 ref.rawsource, ref.rawsource, refid=msgid) |
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684 prbid = self.document.set_id(prb) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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|
685 msg.add_backref(prbid) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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686 ref.replace_self(prb) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
687 else: |
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688 subdef = defs[key] |
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689 parent = ref.parent |
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690 index = parent.index(ref) |
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691 if ('ltrim' in subdef.attributes |
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692 or 'trim' in subdef.attributes): |
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693 if index > 0 and isinstance(parent[index - 1], |
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694 nodes.Text): |
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695 parent[index - 1] = parent[index - 1].rstrip() |
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696 if ('rtrim' in subdef.attributes |
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697 or 'trim' in subdef.attributes): |
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698 if (len(parent) > index + 1 |
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699 and isinstance(parent[index + 1], nodes.Text)): |
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700 parent[index + 1] = parent[index + 1].lstrip() |
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701 subdef_copy = subdef.deepcopy() |
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702 try: |
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703 # Take care of nested substitution references: |
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|
704 for nested_ref in subdef_copy.traverse( |
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|
705 nodes.substitution_reference): |
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706 nested_name = normed[nested_ref['refname'].lower()] |
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|
707 if nested_name in nested.setdefault(nested_name, []): |
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|
708 raise CircularSubstitutionDefinitionError |
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|
709 else: |
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710 nested[nested_name].append(key) |
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711 nested_ref['ref-origin'] = ref |
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712 subreflist.append(nested_ref) |
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713 except CircularSubstitutionDefinitionError: |
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714 parent = ref.parent |
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|
715 if isinstance(parent, nodes.substitution_definition): |
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716 msg = self.document.reporter.error( |
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717 'Circular substitution definition detected:', |
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718 nodes.literal_block(parent.rawsource, |
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719 parent.rawsource), |
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720 line=parent.line, base_node=parent) |
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|
721 parent.replace_self(msg) |
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722 else: |
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723 # find original ref substitution which cased this error |
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724 ref_origin = ref |
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725 while ref_origin.hasattr('ref-origin'): |
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726 ref_origin = ref_origin['ref-origin'] |
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727 msg = self.document.reporter.error( |
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728 'Circular substitution definition referenced: ' |
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|
729 '"%s".' % refname, base_node=ref_origin) |
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|
730 msgid = self.document.set_id(msg) |
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731 prb = nodes.problematic( |
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|
732 ref.rawsource, ref.rawsource, refid=msgid) |
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|
733 prbid = self.document.set_id(prb) |
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|
734 msg.add_backref(prbid) |
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|
735 ref.replace_self(prb) |
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736 else: |
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|
737 ref.replace_self(subdef_copy.children) |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
738 # register refname of the replacment node(s) |
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739 # (needed for resolution of references) |
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|
740 for node in subdef_copy.children: |
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|
741 if isinstance(node, nodes.Referential): |
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742 # HACK: verify refname attribute exists. |
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|
743 # Test with docs/dev/todo.txt, see. |donate| |
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744 if 'refname' in node: |
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|
745 self.document.note_refname(node) |
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|
746 |
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|
747 |
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parents:
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|
748 class TargetNotes(Transform): |
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|
749 |
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750 """ |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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|
751 Creates a footnote for each external target in the text, and corresponding |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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parents:
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|
752 footnote references after each reference. |
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|
753 """ |
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|
754 |
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|
755 default_priority = 540 |
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|
756 """The TargetNotes transform has to be applied after `IndirectHyperlinks` |
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757 but before `Footnotes`.""" |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
758 |
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|
759 |
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parents:
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|
760 def __init__(self, document, startnode): |
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761 Transform.__init__(self, document, startnode=startnode) |
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762 |
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763 self.classes = startnode.details.get('class', []) |
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764 |
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|
765 def apply(self): |
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766 notes = {} |
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|
767 nodelist = [] |
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768 for target in self.document.traverse(nodes.target): |
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769 # Only external targets. |
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|
770 if not target.hasattr('refuri'): |
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771 continue |
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|
772 names = target['names'] |
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773 refs = [] |
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774 for name in names: |
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775 refs.extend(self.document.refnames.get(name, [])) |
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776 if not refs: |
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777 continue |
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|
778 footnote = self.make_target_footnote(target['refuri'], refs, |
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|
779 notes) |
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|
780 if target['refuri'] not in notes: |
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|
781 notes[target['refuri']] = footnote |
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782 nodelist.append(footnote) |
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783 # Take care of anonymous references. |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
784 for ref in self.document.traverse(nodes.reference): |
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|
785 if not ref.get('anonymous'): |
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786 continue |
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787 if ref.hasattr('refuri'): |
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|
788 footnote = self.make_target_footnote(ref['refuri'], [ref], |
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|
789 notes) |
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|
790 if ref['refuri'] not in notes: |
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791 notes[ref['refuri']] = footnote |
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792 nodelist.append(footnote) |
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793 self.startnode.replace_self(nodelist) |
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|
794 |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
795 def make_target_footnote(self, refuri, refs, notes): |
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796 if refuri in notes: # duplicate? |
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797 footnote = notes[refuri] |
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798 assert len(footnote['names']) == 1 |
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|
799 footnote_name = footnote['names'][0] |
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800 else: # original |
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|
801 footnote = nodes.footnote() |
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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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|
802 footnote_id = self.document.set_id(footnote) |
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803 # Use uppercase letters and a colon; they can't be |
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804 # produced inside names by the parser. |
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805 footnote_name = 'TARGET_NOTE: ' + footnote_id |
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806 footnote['auto'] = 1 |
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807 footnote['names'] = [footnote_name] |
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808 footnote_paragraph = nodes.paragraph() |
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809 footnote_paragraph += nodes.reference('', refuri, refuri=refuri) |
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810 footnote += footnote_paragraph |
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811 self.document.note_autofootnote(footnote) |
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812 self.document.note_explicit_target(footnote, footnote) |
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813 for ref in refs: |
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814 if isinstance(ref, nodes.target): |
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815 continue |
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816 refnode = nodes.footnote_reference(refname=footnote_name, auto=1) |
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817 refnode['classes'] += self.classes |
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818 self.document.note_autofootnote_ref(refnode) |
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819 self.document.note_footnote_ref(refnode) |
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820 index = ref.parent.index(ref) + 1 |
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821 reflist = [refnode] |
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822 if not utils.get_trim_footnote_ref_space(self.document.settings): |
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823 if self.classes: |
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824 reflist.insert(0, nodes.inline(text=' ', Classes=self.classes)) |
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825 else: |
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826 reflist.insert(0, nodes.Text(' ')) |
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827 ref.parent.insert(index, reflist) |
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828 return footnote |
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829 |
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830 |
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831 class DanglingReferences(Transform): |
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832 |
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833 """ |
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834 Check for dangling references (incl. footnote & citation) and for |
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835 unreferenced targets. |
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836 """ |
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837 |
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838 default_priority = 850 |
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839 |
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840 def apply(self): |
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841 visitor = DanglingReferencesVisitor( |
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842 self.document, |
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843 self.document.transformer.unknown_reference_resolvers) |
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844 self.document.walk(visitor) |
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845 # *After* resolving all references, check for unreferenced |
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846 # targets: |
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847 for target in self.document.traverse(nodes.target): |
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848 if not target.referenced: |
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849 if target.get('anonymous'): |
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850 # If we have unreferenced anonymous targets, there |
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851 # is already an error message about anonymous |
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852 # hyperlink mismatch; no need to generate another |
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853 # message. |
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854 continue |
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855 if target['names']: |
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856 naming = target['names'][0] |
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857 elif target['ids']: |
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858 naming = target['ids'][0] |
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859 else: |
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860 # Hack: Propagated targets always have their refid |
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861 # attribute set. |
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862 naming = target['refid'] |
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863 self.document.reporter.info( |
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864 'Hyperlink target "%s" is not referenced.' |
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865 % naming, base_node=target) |
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866 |
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867 |
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868 class DanglingReferencesVisitor(nodes.SparseNodeVisitor): |
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869 |
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870 def __init__(self, document, unknown_reference_resolvers): |
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871 nodes.SparseNodeVisitor.__init__(self, document) |
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872 self.document = document |
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873 self.unknown_reference_resolvers = unknown_reference_resolvers |
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874 |
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875 def unknown_visit(self, node): |
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876 pass |
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|
877 |
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878 def visit_reference(self, node): |
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879 if node.resolved or not node.hasattr('refname'): |
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|
880 return |
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881 refname = node['refname'] |
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882 id = self.document.nameids.get(refname) |
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883 if id is None: |
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884 for resolver_function in self.unknown_reference_resolvers: |
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885 if resolver_function(node): |
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886 break |
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887 else: |
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888 if refname in self.document.nameids: |
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889 msg = self.document.reporter.error( |
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890 'Duplicate target name, cannot be used as a unique ' |
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891 'reference: "%s".' % (node['refname']), base_node=node) |
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892 else: |
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893 msg = self.document.reporter.error( |
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894 'Unknown target name: "%s".' % (node['refname']), |
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895 base_node=node) |
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896 msgid = self.document.set_id(msg) |
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897 prb = nodes.problematic( |
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898 node.rawsource, node.rawsource, refid=msgid) |
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899 try: |
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900 prbid = node['ids'][0] |
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901 except IndexError: |
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902 prbid = self.document.set_id(prb) |
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903 msg.add_backref(prbid) |
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904 node.replace_self(prb) |
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905 else: |
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906 del node['refname'] |
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907 node['refid'] = id |
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908 self.document.ids[id].note_referenced_by(id=id) |
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909 node.resolved = 1 |
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910 |
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911 visit_footnote_reference = visit_citation_reference = visit_reference |