Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/galaxy/tool_util/fetcher.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
| author | shellac |
|---|---|
| date | Sat, 02 May 2020 07:14:21 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:26e78fe6e8c4 |
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| 1 from galaxy.util import plugin_config | |
| 2 | |
| 3 | |
| 4 class ToolLocationFetcher(object): | |
| 5 | |
| 6 def __init__(self): | |
| 7 self.resolver_classes = self.__resolvers_dict() | |
| 8 | |
| 9 def __resolvers_dict(self): | |
| 10 import galaxy.tool_util.locations | |
| 11 return plugin_config.plugins_dict(galaxy.tool_util.locations, 'scheme') | |
| 12 | |
| 13 def to_tool_path(self, path_or_uri_like, **kwds): | |
| 14 if "://" not in path_or_uri_like: | |
| 15 path = path_or_uri_like | |
| 16 else: | |
| 17 uri_like = path_or_uri_like | |
| 18 if ":" not in path_or_uri_like: | |
| 19 raise Exception("Invalid URI passed to get_tool_source") | |
| 20 scheme, rest = uri_like.split(":", 2) | |
| 21 if scheme not in self.resolver_classes: | |
| 22 raise Exception("Unknown tool scheme [%s] for URI [%s]" % (scheme, uri_like)) | |
| 23 path = self.resolver_classes[scheme]().get_tool_source_path(uri_like) | |
| 24 | |
| 25 return path |