guppy_basecaller: env/lib/python3.7/site-packages/humanfriendly/prompts.py comparison

comparison env/lib/python3.7/site-packages/humanfriendly/prompts.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

author	shellac
date	Sat, 02 May 2020 07:14:21 -0400
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--1:000000000000
+:26e78fe6e8c4
+# vim: fileencoding=utf-8
+# Human friendly input/output in Python.
+#
+# Author: Peter Odding <peter@peterodding.com>
+# Last Change: February 9, 2020
+# URL: https://humanfriendly.readthedocs.io
+"""
+Interactive terminal prompts.
+The :mod:`~humanfriendly.prompts` module enables interaction with the user
+(operator) by asking for confirmation (:func:`prompt_for_confirmation()`) and
+asking to choose from a list of options (:func:`prompt_for_choice()`). It works
+by rendering interactive prompts on the terminal.
+"""
+# Standard library modules.
+import logging
+import sys
+# Modules included in our package.
+from humanfriendly.compat import interactive_prompt
+from humanfriendly.terminal import (
+HIGHLIGHT_COLOR,
+ansi_strip,
+ansi_wrap,
+connected_to_terminal,
+terminal_supports_colors,
+warning,
+)
+from humanfriendly.text import format, concatenate
+# Public identifiers that require documentation.
+__all__ = (
+'MAX_ATTEMPTS',
+'TooManyInvalidReplies',
+'logger',
+'prepare_friendly_prompts',
+'prepare_prompt_text',
+'prompt_for_choice',
+'prompt_for_confirmation',
+'prompt_for_input',
+'retry_limit',
+)
+MAX_ATTEMPTS = 10
+"""The number of times an interactive prompt is shown on invalid input (an integer)."""
+# Initialize a logger for this module.
+logger = logging.getLogger(__name__)
+def prompt_for_confirmation(question, default=None, padding=True):
+"""
+Prompt the user for confirmation.
+:param question: The text that explains what the user is confirming (a string).
+:param default: The default value (a boolean) or :data:`None`.
+:param padding: Refer to the documentation of :func:`prompt_for_input()`.
+:returns: - If the user enters 'yes' or 'y' then :data:`True` is returned.
+- If the user enters 'no' or 'n' then :data:`False`  is returned.
+- If the user doesn't enter any text or standard input is not
+connected to a terminal (which makes it impossible to prompt
+the user) the value of the keyword argument ``default`` is
+returned (if that value is not :data:`None`).
+:raises: - Any exceptions raised by :func:`retry_limit()`.
+- Any exceptions raised by :func:`prompt_for_input()`.
+When `default` is :data:`False` and the user doesn't enter any text an
+error message is printed and the prompt is repeated:
+>>> prompt_for_confirmation("Are you sure?")
+<BLANKLINE>
+Are you sure? [y/n]
+<BLANKLINE>
+Error: Please enter 'yes' or 'no' (there's no default choice).
+<BLANKLINE>
+Are you sure? [y/n]
+The same thing happens when the user enters text that isn't recognized:
+>>> prompt_for_confirmation("Are you sure?")
+<BLANKLINE>
+Are you sure? [y/n] about what?
+<BLANKLINE>
+Error: Please enter 'yes' or 'no' (the text 'about what?' is not recognized).
+<BLANKLINE>
+Are you sure? [y/n]
+"""
+# Generate the text for the prompt.
+prompt_text = prepare_prompt_text(question, bold=True)
+# Append the valid replies (and default reply) to the prompt text.
+hint = "[Y/n]" if default else "[y/N]" if default is not None else "[y/n]"
+prompt_text += " %s " % prepare_prompt_text(hint, color=HIGHLIGHT_COLOR)
+# Loop until a valid response is given.
+logger.debug("Requesting interactive confirmation from terminal: %r", ansi_strip(prompt_text).rstrip())
+for attempt in retry_limit():
+reply = prompt_for_input(prompt_text, '', padding=padding, strip=True)
+if reply.lower() in ('y', 'yes'):
+logger.debug("Confirmation granted by reply (%r).", reply)
+return True
+elif reply.lower() in ('n', 'no'):
+logger.debug("Confirmation denied by reply (%r).", reply)
+return False
+elif (not reply) and default is not None:
+logger.debug("Default choice selected by empty reply (%r).",
+"granted" if default else "denied")
+return default
+else:
+details = ("the text '%s' is not recognized" % reply
+if reply else "there's no default choice")
+logger.debug("Got %s reply (%s), retrying (%i/%i) ..",
+"invalid" if reply else "empty", details,
+attempt, MAX_ATTEMPTS)
+warning("{indent}Error: Please enter 'yes' or 'no' ({details}).",
+indent=' ' if padding else '', details=details)
+def prompt_for_choice(choices, default=None, padding=True):
+"""
+Prompt the user to select a choice from a group of options.
+:param choices: A sequence of strings with available options.
+:param default: The default choice if the user simply presses Enter
+(expected to be a string, defaults to :data:`None`).
+:param padding: Refer to the documentation of
+:func:`~humanfriendly.prompts.prompt_for_input()`.
+:returns: The string corresponding to the user's choice.
+:raises: - :exc:`~exceptions.ValueError` if `choices` is an empty sequence.
+- Any exceptions raised by
+:func:`~humanfriendly.prompts.retry_limit()`.
+- Any exceptions raised by
+:func:`~humanfriendly.prompts.prompt_for_input()`.
+When no options are given an exception is raised:
+>>> prompt_for_choice([])
+Traceback (most recent call last):
+File "humanfriendly/prompts.py", line 148, in prompt_for_choice
+raise ValueError("Can't prompt for choice without any options!")
+ValueError: Can't prompt for choice without any options!
+If a single option is given the user isn't prompted:
+>>> prompt_for_choice(['only one choice'])
+'only one choice'
+Here's what the actual prompt looks like by default:
+>>> prompt_for_choice(['first option', 'second option'])
+<BLANKLINE>
+1. first option
+2. second option
+<BLANKLINE>
+Enter your choice as a number or unique substring (Control-C aborts): second
+<BLANKLINE>
+'second option'
+If you don't like the whitespace (empty lines and indentation):
+>>> prompt_for_choice(['first option', 'second option'], padding=False)
+1. first option
+2. second option
+Enter your choice as a number or unique substring (Control-C aborts): first
+'first option'
+"""
+indent = ' ' if padding else ''
+# Make sure we can use 'choices' more than once (i.e. not a generator).
+choices = list(choices)
+if len(choices) == 1:
+# If there's only one option there's no point in prompting the user.
+logger.debug("Skipping interactive prompt because there's only option (%r).", choices[0])
+return choices[0]
+elif not choices:
+# We can't render a choice prompt without any options.
+raise ValueError("Can't prompt for choice without any options!")
+# Generate the prompt text.
+prompt_text = ('\n\n' if padding else '\n').join([
+# Present the available choices in a user friendly way.
+"\n".join([
+(u" %i. %s" % (i, choice)) + (" (default choice)" if choice == default else "")
+for i, choice in enumerate(choices, start=1)
+]),
+# Instructions for the user.
+"Enter your choice as a number or unique substring (Control-C aborts): ",
+])
+prompt_text = prepare_prompt_text(prompt_text, bold=True)
+# Loop until a valid choice is made.
+logger.debug("Requesting interactive choice on terminal (options are %s) ..",
+concatenate(map(repr, choices)))
+for attempt in retry_limit():
+reply = prompt_for_input(prompt_text, '', padding=padding, strip=True)
+if not reply and default is not None:
+logger.debug("Default choice selected by empty reply (%r).", default)
+return default
+elif reply.isdigit():
+index = int(reply) - 1
+if 0 <= index < len(choices):
+logger.debug("Option (%r) selected by numeric reply (%s).", choices[index], reply)
+return choices[index]
+# Check for substring matches.
+matches = []
+for choice in choices:
+lower_reply = reply.lower()
+lower_choice = choice.lower()
+if lower_reply == lower_choice:
+# If we have an 'exact' match we return it immediately.
+logger.debug("Option (%r) selected by reply (exact match).", choice)
+return choice
+elif lower_reply in lower_choice and len(lower_reply) > 0:
+# Otherwise we gather substring matches.
+matches.append(choice)
+if len(matches) == 1:
+# If a single choice was matched we return it.
+logger.debug("Option (%r) selected by reply (substring match on %r).", matches[0], reply)
+return matches[0]
+else:
+# Give the user a hint about what went wrong.
+if matches:
+details = format("text '%s' matches more than one choice: %s", reply, concatenate(matches))
+elif reply.isdigit():
+details = format("number %i is not a valid choice", int(reply))
+elif reply and not reply.isspace():
+details = format("text '%s' doesn't match any choices", reply)
+else:
+details = "there's no default choice"
+logger.debug("Got %s reply (%s), retrying (%i/%i) ..",
+"invalid" if reply else "empty", details,
+attempt, MAX_ATTEMPTS)
+warning("%sError: Invalid input (%s).", indent, details)
+def prompt_for_input(question, default=None, padding=True, strip=True):
+"""
+Prompt the user for input (free form text).
+:param question: An explanation of what is expected from the user (a string).
+:param default: The return value if the user doesn't enter any text or
+standard input is not connected to a terminal (which
+makes it impossible to prompt the user).
+:param padding: Render empty lines before and after the prompt to make it
+stand out from the surrounding text? (a boolean, defaults
+to :data:`True`)
+:param strip: Strip leading/trailing whitespace from the user's reply?
+:returns: The text entered by the user (a string) or the value of the
+`default` argument.
+:raises: - :exc:`~exceptions.KeyboardInterrupt` when the program is
+interrupted_ while the prompt is active, for example
+because the user presses Control-C_.
+- :exc:`~exceptions.EOFError` when reading from `standard input`_
+fails, for example because the user presses Control-D_ or
+because the standard input stream is redirected (only if
+`default` is :data:`None`).
+.. _Control-C: https://en.wikipedia.org/wiki/Control-C#In_command-line_environments
+.. _Control-D: https://en.wikipedia.org/wiki/End-of-transmission_character#Meaning_in_Unix
+.. _interrupted: https://en.wikipedia.org/wiki/Unix_signal#SIGINT
+.. _standard input: https://en.wikipedia.org/wiki/Standard_streams#Standard_input_.28stdin.29
+"""
+prepare_friendly_prompts()
+reply = None
+try:
+# Prefix an empty line to the text and indent by one space?
+if padding:
+question = '\n' + question
+question = question.replace('\n', '\n ')
+# Render the prompt and wait for the user's reply.
+try:
+reply = interactive_prompt(question)
+finally:
+if reply is None:
+# If the user terminated the prompt using Control-C or
+# Control-D instead of pressing Enter no newline will be
+# rendered after the prompt's text. The result looks kind of
+# weird:
+#
+#   $ python -c 'print(raw_input("Are you sure? "))'
+#   Are you sure? ^CTraceback (most recent call last):
+#     File "<string>", line 1, in <module>
+#   KeyboardInterrupt
+#
+# We can avoid this by emitting a newline ourselves if an
+# exception was raised (signaled by `reply' being None).
+sys.stderr.write('\n')
+if padding:
+# If the caller requested (didn't opt out of) `padding' then we'll
+# emit a newline regardless of whether an exception is being
+# handled. This helps to make interactive prompts `stand out' from
+# a surrounding `wall of text' on the terminal.
+sys.stderr.write('\n')
+except BaseException as e:
+if isinstance(e, EOFError) and default is not None:
+# If standard input isn't connected to an interactive terminal
+# but the caller provided a default we'll return that.
+logger.debug("Got EOF from terminal, returning default value (%r) ..", default)
+return default
+else:
+# Otherwise we log that the prompt was interrupted but propagate
+# the exception to the caller.
+logger.warning("Interactive prompt was interrupted by exception!", exc_info=True)
+raise
+if default is not None and not reply:
+# If the reply is empty and `default' is None we don't want to return
+# None because it's nicer for callers to be able to assume that the
+# return value is always a string.
+return default
+else:
+return reply.strip()
+def prepare_prompt_text(prompt_text, **options):
+"""
+Wrap a text to be rendered as an interactive prompt in ANSI escape sequences.
+:param prompt_text: The text to render on the prompt (a string).
+:param options: Any keyword arguments are passed on to :func:`.ansi_wrap()`.
+:returns: The resulting prompt text (a string).
+ANSI escape sequences are only used when the standard output stream is
+connected to a terminal. When the standard input stream is connected to a
+terminal any escape sequences are wrapped in "readline hints".
+"""
+return (ansi_wrap(prompt_text, readline_hints=connected_to_terminal(sys.stdin), **options)
+if terminal_supports_colors(sys.stdout)
+else prompt_text)
+def prepare_friendly_prompts():
+u"""
+Make interactive prompts more user friendly.
+The prompts presented by :func:`python2:raw_input()` (in Python 2) and
+:func:`python3:input()` (in Python 3) are not very user friendly by
+default, for example the cursor keys (:kbd:`←`, :kbd:`↑`, :kbd:`→` and
+:kbd:`↓`) and the :kbd:`Home` and :kbd:`End` keys enter characters instead
+of performing the action you would expect them to. By simply importing the
+:mod:`readline` module these prompts become much friendlier (as mentioned
+in the Python standard library documentation).
+This function is called by the other functions in this module to enable
+user friendly prompts.
+"""
+import readline  # NOQA
+def retry_limit(limit=MAX_ATTEMPTS):
+"""
+Allow the user to provide valid input up to `limit` times.
+:param limit: The maximum number of attempts (a number,
+defaults to :data:`MAX_ATTEMPTS`).
+:returns: A generator of numbers starting from one.
+:raises: :exc:`TooManyInvalidReplies` when an interactive prompt
+receives repeated invalid input (:data:`MAX_ATTEMPTS`).
+This function returns a generator for interactive prompts that want to
+repeat on invalid input without getting stuck in infinite loops.
+"""
+for i in range(limit):
+yield i + 1
+msg = "Received too many invalid replies on interactive prompt, giving up! (tried %i times)"
+formatted_msg = msg % limit
+# Make sure the event is logged.
+logger.warning(formatted_msg)
+# Force the caller to decide what to do now.
+raise TooManyInvalidReplies(formatted_msg)
+class TooManyInvalidReplies(Exception):
+"""Raised by interactive prompts when they've received too many invalid inputs."""

Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/humanfriendly/prompts.py @ 0:26e78fe6e8c4 draft