Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/setuptools/command/bdist_egg.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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-1:000000000000 | 0:26e78fe6e8c4 |
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1 """setuptools.command.bdist_egg | |
2 | |
3 Build .egg distributions""" | |
4 | |
5 from distutils.errors import DistutilsSetupError | |
6 from distutils.dir_util import remove_tree, mkpath | |
7 from distutils import log | |
8 from types import CodeType | |
9 import sys | |
10 import os | |
11 import re | |
12 import textwrap | |
13 import marshal | |
14 | |
15 from setuptools.extern import six | |
16 | |
17 from pkg_resources import get_build_platform, Distribution, ensure_directory | |
18 from pkg_resources import EntryPoint | |
19 from setuptools.extension import Library | |
20 from setuptools import Command | |
21 | |
22 try: | |
23 # Python 2.7 or >=3.2 | |
24 from sysconfig import get_path, get_python_version | |
25 | |
26 def _get_purelib(): | |
27 return get_path("purelib") | |
28 except ImportError: | |
29 from distutils.sysconfig import get_python_lib, get_python_version | |
30 | |
31 def _get_purelib(): | |
32 return get_python_lib(False) | |
33 | |
34 | |
35 def strip_module(filename): | |
36 if '.' in filename: | |
37 filename = os.path.splitext(filename)[0] | |
38 if filename.endswith('module'): | |
39 filename = filename[:-6] | |
40 return filename | |
41 | |
42 | |
43 def sorted_walk(dir): | |
44 """Do os.walk in a reproducible way, | |
45 independent of indeterministic filesystem readdir order | |
46 """ | |
47 for base, dirs, files in os.walk(dir): | |
48 dirs.sort() | |
49 files.sort() | |
50 yield base, dirs, files | |
51 | |
52 | |
53 def write_stub(resource, pyfile): | |
54 _stub_template = textwrap.dedent(""" | |
55 def __bootstrap__(): | |
56 global __bootstrap__, __loader__, __file__ | |
57 import sys, pkg_resources, imp | |
58 __file__ = pkg_resources.resource_filename(__name__, %r) | |
59 __loader__ = None; del __bootstrap__, __loader__ | |
60 imp.load_dynamic(__name__,__file__) | |
61 __bootstrap__() | |
62 """).lstrip() | |
63 with open(pyfile, 'w') as f: | |
64 f.write(_stub_template % resource) | |
65 | |
66 | |
67 class bdist_egg(Command): | |
68 description = "create an \"egg\" distribution" | |
69 | |
70 user_options = [ | |
71 ('bdist-dir=', 'b', | |
72 "temporary directory for creating the distribution"), | |
73 ('plat-name=', 'p', "platform name to embed in generated filenames " | |
74 "(default: %s)" % get_build_platform()), | |
75 ('exclude-source-files', None, | |
76 "remove all .py files from the generated egg"), | |
77 ('keep-temp', 'k', | |
78 "keep the pseudo-installation tree around after " + | |
79 "creating the distribution archive"), | |
80 ('dist-dir=', 'd', | |
81 "directory to put final built distributions in"), | |
82 ('skip-build', None, | |
83 "skip rebuilding everything (for testing/debugging)"), | |
84 ] | |
85 | |
86 boolean_options = [ | |
87 'keep-temp', 'skip-build', 'exclude-source-files' | |
88 ] | |
89 | |
90 def initialize_options(self): | |
91 self.bdist_dir = None | |
92 self.plat_name = None | |
93 self.keep_temp = 0 | |
94 self.dist_dir = None | |
95 self.skip_build = 0 | |
96 self.egg_output = None | |
97 self.exclude_source_files = None | |
98 | |
99 def finalize_options(self): | |
100 ei_cmd = self.ei_cmd = self.get_finalized_command("egg_info") | |
101 self.egg_info = ei_cmd.egg_info | |
102 | |
103 if self.bdist_dir is None: | |
104 bdist_base = self.get_finalized_command('bdist').bdist_base | |
105 self.bdist_dir = os.path.join(bdist_base, 'egg') | |
106 | |
107 if self.plat_name is None: | |
108 self.plat_name = get_build_platform() | |
109 | |
110 self.set_undefined_options('bdist', ('dist_dir', 'dist_dir')) | |
111 | |
112 if self.egg_output is None: | |
113 | |
114 # Compute filename of the output egg | |
115 basename = Distribution( | |
116 None, None, ei_cmd.egg_name, ei_cmd.egg_version, | |
117 get_python_version(), | |
118 self.distribution.has_ext_modules() and self.plat_name | |
119 ).egg_name() | |
120 | |
121 self.egg_output = os.path.join(self.dist_dir, basename + '.egg') | |
122 | |
123 def do_install_data(self): | |
124 # Hack for packages that install data to install's --install-lib | |
125 self.get_finalized_command('install').install_lib = self.bdist_dir | |
126 | |
127 site_packages = os.path.normcase(os.path.realpath(_get_purelib())) | |
128 old, self.distribution.data_files = self.distribution.data_files, [] | |
129 | |
130 for item in old: | |
131 if isinstance(item, tuple) and len(item) == 2: | |
132 if os.path.isabs(item[0]): | |
133 realpath = os.path.realpath(item[0]) | |
134 normalized = os.path.normcase(realpath) | |
135 if normalized == site_packages or normalized.startswith( | |
136 site_packages + os.sep | |
137 ): | |
138 item = realpath[len(site_packages) + 1:], item[1] | |
139 # XXX else: raise ??? | |
140 self.distribution.data_files.append(item) | |
141 | |
142 try: | |
143 log.info("installing package data to %s", self.bdist_dir) | |
144 self.call_command('install_data', force=0, root=None) | |
145 finally: | |
146 self.distribution.data_files = old | |
147 | |
148 def get_outputs(self): | |
149 return [self.egg_output] | |
150 | |
151 def call_command(self, cmdname, **kw): | |
152 """Invoke reinitialized command `cmdname` with keyword args""" | |
153 for dirname in INSTALL_DIRECTORY_ATTRS: | |
154 kw.setdefault(dirname, self.bdist_dir) | |
155 kw.setdefault('skip_build', self.skip_build) | |
156 kw.setdefault('dry_run', self.dry_run) | |
157 cmd = self.reinitialize_command(cmdname, **kw) | |
158 self.run_command(cmdname) | |
159 return cmd | |
160 | |
161 def run(self): | |
162 # Generate metadata first | |
163 self.run_command("egg_info") | |
164 # We run install_lib before install_data, because some data hacks | |
165 # pull their data path from the install_lib command. | |
166 log.info("installing library code to %s", self.bdist_dir) | |
167 instcmd = self.get_finalized_command('install') | |
168 old_root = instcmd.root | |
169 instcmd.root = None | |
170 if self.distribution.has_c_libraries() and not self.skip_build: | |
171 self.run_command('build_clib') | |
172 cmd = self.call_command('install_lib', warn_dir=0) | |
173 instcmd.root = old_root | |
174 | |
175 all_outputs, ext_outputs = self.get_ext_outputs() | |
176 self.stubs = [] | |
177 to_compile = [] | |
178 for (p, ext_name) in enumerate(ext_outputs): | |
179 filename, ext = os.path.splitext(ext_name) | |
180 pyfile = os.path.join(self.bdist_dir, strip_module(filename) + | |
181 '.py') | |
182 self.stubs.append(pyfile) | |
183 log.info("creating stub loader for %s", ext_name) | |
184 if not self.dry_run: | |
185 write_stub(os.path.basename(ext_name), pyfile) | |
186 to_compile.append(pyfile) | |
187 ext_outputs[p] = ext_name.replace(os.sep, '/') | |
188 | |
189 if to_compile: | |
190 cmd.byte_compile(to_compile) | |
191 if self.distribution.data_files: | |
192 self.do_install_data() | |
193 | |
194 # Make the EGG-INFO directory | |
195 archive_root = self.bdist_dir | |
196 egg_info = os.path.join(archive_root, 'EGG-INFO') | |
197 self.mkpath(egg_info) | |
198 if self.distribution.scripts: | |
199 script_dir = os.path.join(egg_info, 'scripts') | |
200 log.info("installing scripts to %s", script_dir) | |
201 self.call_command('install_scripts', install_dir=script_dir, | |
202 no_ep=1) | |
203 | |
204 self.copy_metadata_to(egg_info) | |
205 native_libs = os.path.join(egg_info, "native_libs.txt") | |
206 if all_outputs: | |
207 log.info("writing %s", native_libs) | |
208 if not self.dry_run: | |
209 ensure_directory(native_libs) | |
210 libs_file = open(native_libs, 'wt') | |
211 libs_file.write('\n'.join(all_outputs)) | |
212 libs_file.write('\n') | |
213 libs_file.close() | |
214 elif os.path.isfile(native_libs): | |
215 log.info("removing %s", native_libs) | |
216 if not self.dry_run: | |
217 os.unlink(native_libs) | |
218 | |
219 write_safety_flag( | |
220 os.path.join(archive_root, 'EGG-INFO'), self.zip_safe() | |
221 ) | |
222 | |
223 if os.path.exists(os.path.join(self.egg_info, 'depends.txt')): | |
224 log.warn( | |
225 "WARNING: 'depends.txt' will not be used by setuptools 0.6!\n" | |
226 "Use the install_requires/extras_require setup() args instead." | |
227 ) | |
228 | |
229 if self.exclude_source_files: | |
230 self.zap_pyfiles() | |
231 | |
232 # Make the archive | |
233 make_zipfile(self.egg_output, archive_root, verbose=self.verbose, | |
234 dry_run=self.dry_run, mode=self.gen_header()) | |
235 if not self.keep_temp: | |
236 remove_tree(self.bdist_dir, dry_run=self.dry_run) | |
237 | |
238 # Add to 'Distribution.dist_files' so that the "upload" command works | |
239 getattr(self.distribution, 'dist_files', []).append( | |
240 ('bdist_egg', get_python_version(), self.egg_output)) | |
241 | |
242 def zap_pyfiles(self): | |
243 log.info("Removing .py files from temporary directory") | |
244 for base, dirs, files in walk_egg(self.bdist_dir): | |
245 for name in files: | |
246 path = os.path.join(base, name) | |
247 | |
248 if name.endswith('.py'): | |
249 log.debug("Deleting %s", path) | |
250 os.unlink(path) | |
251 | |
252 if base.endswith('__pycache__'): | |
253 path_old = path | |
254 | |
255 pattern = r'(?P<name>.+)\.(?P<magic>[^.]+)\.pyc' | |
256 m = re.match(pattern, name) | |
257 path_new = os.path.join( | |
258 base, os.pardir, m.group('name') + '.pyc') | |
259 log.info( | |
260 "Renaming file from [%s] to [%s]" | |
261 % (path_old, path_new)) | |
262 try: | |
263 os.remove(path_new) | |
264 except OSError: | |
265 pass | |
266 os.rename(path_old, path_new) | |
267 | |
268 def zip_safe(self): | |
269 safe = getattr(self.distribution, 'zip_safe', None) | |
270 if safe is not None: | |
271 return safe | |
272 log.warn("zip_safe flag not set; analyzing archive contents...") | |
273 return analyze_egg(self.bdist_dir, self.stubs) | |
274 | |
275 def gen_header(self): | |
276 epm = EntryPoint.parse_map(self.distribution.entry_points or '') | |
277 ep = epm.get('setuptools.installation', {}).get('eggsecutable') | |
278 if ep is None: | |
279 return 'w' # not an eggsecutable, do it the usual way. | |
280 | |
281 if not ep.attrs or ep.extras: | |
282 raise DistutilsSetupError( | |
283 "eggsecutable entry point (%r) cannot have 'extras' " | |
284 "or refer to a module" % (ep,) | |
285 ) | |
286 | |
287 pyver = sys.version[:3] | |
288 pkg = ep.module_name | |
289 full = '.'.join(ep.attrs) | |
290 base = ep.attrs[0] | |
291 basename = os.path.basename(self.egg_output) | |
292 | |
293 header = ( | |
294 "#!/bin/sh\n" | |
295 'if [ `basename $0` = "%(basename)s" ]\n' | |
296 'then exec python%(pyver)s -c "' | |
297 "import sys, os; sys.path.insert(0, os.path.abspath('$0')); " | |
298 "from %(pkg)s import %(base)s; sys.exit(%(full)s())" | |
299 '" "$@"\n' | |
300 'else\n' | |
301 ' echo $0 is not the correct name for this egg file.\n' | |
302 ' echo Please rename it back to %(basename)s and try again.\n' | |
303 ' exec false\n' | |
304 'fi\n' | |
305 ) % locals() | |
306 | |
307 if not self.dry_run: | |
308 mkpath(os.path.dirname(self.egg_output), dry_run=self.dry_run) | |
309 f = open(self.egg_output, 'w') | |
310 f.write(header) | |
311 f.close() | |
312 return 'a' | |
313 | |
314 def copy_metadata_to(self, target_dir): | |
315 "Copy metadata (egg info) to the target_dir" | |
316 # normalize the path (so that a forward-slash in egg_info will | |
317 # match using startswith below) | |
318 norm_egg_info = os.path.normpath(self.egg_info) | |
319 prefix = os.path.join(norm_egg_info, '') | |
320 for path in self.ei_cmd.filelist.files: | |
321 if path.startswith(prefix): | |
322 target = os.path.join(target_dir, path[len(prefix):]) | |
323 ensure_directory(target) | |
324 self.copy_file(path, target) | |
325 | |
326 def get_ext_outputs(self): | |
327 """Get a list of relative paths to C extensions in the output distro""" | |
328 | |
329 all_outputs = [] | |
330 ext_outputs = [] | |
331 | |
332 paths = {self.bdist_dir: ''} | |
333 for base, dirs, files in sorted_walk(self.bdist_dir): | |
334 for filename in files: | |
335 if os.path.splitext(filename)[1].lower() in NATIVE_EXTENSIONS: | |
336 all_outputs.append(paths[base] + filename) | |
337 for filename in dirs: | |
338 paths[os.path.join(base, filename)] = (paths[base] + | |
339 filename + '/') | |
340 | |
341 if self.distribution.has_ext_modules(): | |
342 build_cmd = self.get_finalized_command('build_ext') | |
343 for ext in build_cmd.extensions: | |
344 if isinstance(ext, Library): | |
345 continue | |
346 fullname = build_cmd.get_ext_fullname(ext.name) | |
347 filename = build_cmd.get_ext_filename(fullname) | |
348 if not os.path.basename(filename).startswith('dl-'): | |
349 if os.path.exists(os.path.join(self.bdist_dir, filename)): | |
350 ext_outputs.append(filename) | |
351 | |
352 return all_outputs, ext_outputs | |
353 | |
354 | |
355 NATIVE_EXTENSIONS = dict.fromkeys('.dll .so .dylib .pyd'.split()) | |
356 | |
357 | |
358 def walk_egg(egg_dir): | |
359 """Walk an unpacked egg's contents, skipping the metadata directory""" | |
360 walker = sorted_walk(egg_dir) | |
361 base, dirs, files = next(walker) | |
362 if 'EGG-INFO' in dirs: | |
363 dirs.remove('EGG-INFO') | |
364 yield base, dirs, files | |
365 for bdf in walker: | |
366 yield bdf | |
367 | |
368 | |
369 def analyze_egg(egg_dir, stubs): | |
370 # check for existing flag in EGG-INFO | |
371 for flag, fn in safety_flags.items(): | |
372 if os.path.exists(os.path.join(egg_dir, 'EGG-INFO', fn)): | |
373 return flag | |
374 if not can_scan(): | |
375 return False | |
376 safe = True | |
377 for base, dirs, files in walk_egg(egg_dir): | |
378 for name in files: | |
379 if name.endswith('.py') or name.endswith('.pyw'): | |
380 continue | |
381 elif name.endswith('.pyc') or name.endswith('.pyo'): | |
382 # always scan, even if we already know we're not safe | |
383 safe = scan_module(egg_dir, base, name, stubs) and safe | |
384 return safe | |
385 | |
386 | |
387 def write_safety_flag(egg_dir, safe): | |
388 # Write or remove zip safety flag file(s) | |
389 for flag, fn in safety_flags.items(): | |
390 fn = os.path.join(egg_dir, fn) | |
391 if os.path.exists(fn): | |
392 if safe is None or bool(safe) != flag: | |
393 os.unlink(fn) | |
394 elif safe is not None and bool(safe) == flag: | |
395 f = open(fn, 'wt') | |
396 f.write('\n') | |
397 f.close() | |
398 | |
399 | |
400 safety_flags = { | |
401 True: 'zip-safe', | |
402 False: 'not-zip-safe', | |
403 } | |
404 | |
405 | |
406 def scan_module(egg_dir, base, name, stubs): | |
407 """Check whether module possibly uses unsafe-for-zipfile stuff""" | |
408 | |
409 filename = os.path.join(base, name) | |
410 if filename[:-1] in stubs: | |
411 return True # Extension module | |
412 pkg = base[len(egg_dir) + 1:].replace(os.sep, '.') | |
413 module = pkg + (pkg and '.' or '') + os.path.splitext(name)[0] | |
414 if six.PY2: | |
415 skip = 8 # skip magic & date | |
416 elif sys.version_info < (3, 7): | |
417 skip = 12 # skip magic & date & file size | |
418 else: | |
419 skip = 16 # skip magic & reserved? & date & file size | |
420 f = open(filename, 'rb') | |
421 f.read(skip) | |
422 code = marshal.load(f) | |
423 f.close() | |
424 safe = True | |
425 symbols = dict.fromkeys(iter_symbols(code)) | |
426 for bad in ['__file__', '__path__']: | |
427 if bad in symbols: | |
428 log.warn("%s: module references %s", module, bad) | |
429 safe = False | |
430 if 'inspect' in symbols: | |
431 for bad in [ | |
432 'getsource', 'getabsfile', 'getsourcefile', 'getfile' | |
433 'getsourcelines', 'findsource', 'getcomments', 'getframeinfo', | |
434 'getinnerframes', 'getouterframes', 'stack', 'trace' | |
435 ]: | |
436 if bad in symbols: | |
437 log.warn("%s: module MAY be using inspect.%s", module, bad) | |
438 safe = False | |
439 return safe | |
440 | |
441 | |
442 def iter_symbols(code): | |
443 """Yield names and strings used by `code` and its nested code objects""" | |
444 for name in code.co_names: | |
445 yield name | |
446 for const in code.co_consts: | |
447 if isinstance(const, six.string_types): | |
448 yield const | |
449 elif isinstance(const, CodeType): | |
450 for name in iter_symbols(const): | |
451 yield name | |
452 | |
453 | |
454 def can_scan(): | |
455 if not sys.platform.startswith('java') and sys.platform != 'cli': | |
456 # CPython, PyPy, etc. | |
457 return True | |
458 log.warn("Unable to analyze compiled code on this platform.") | |
459 log.warn("Please ask the author to include a 'zip_safe'" | |
460 " setting (either True or False) in the package's setup.py") | |
461 | |
462 | |
463 # Attribute names of options for commands that might need to be convinced to | |
464 # install to the egg build directory | |
465 | |
466 INSTALL_DIRECTORY_ATTRS = [ | |
467 'install_lib', 'install_dir', 'install_data', 'install_base' | |
468 ] | |
469 | |
470 | |
471 def make_zipfile(zip_filename, base_dir, verbose=0, dry_run=0, compress=True, | |
472 mode='w'): | |
473 """Create a zip file from all the files under 'base_dir'. The output | |
474 zip file will be named 'base_dir' + ".zip". Uses either the "zipfile" | |
475 Python module (if available) or the InfoZIP "zip" utility (if installed | |
476 and found on the default search path). If neither tool is available, | |
477 raises DistutilsExecError. Returns the name of the output zip file. | |
478 """ | |
479 import zipfile | |
480 | |
481 mkpath(os.path.dirname(zip_filename), dry_run=dry_run) | |
482 log.info("creating '%s' and adding '%s' to it", zip_filename, base_dir) | |
483 | |
484 def visit(z, dirname, names): | |
485 for name in names: | |
486 path = os.path.normpath(os.path.join(dirname, name)) | |
487 if os.path.isfile(path): | |
488 p = path[len(base_dir) + 1:] | |
489 if not dry_run: | |
490 z.write(path, p) | |
491 log.debug("adding '%s'", p) | |
492 | |
493 compression = zipfile.ZIP_DEFLATED if compress else zipfile.ZIP_STORED | |
494 if not dry_run: | |
495 z = zipfile.ZipFile(zip_filename, mode, compression=compression) | |
496 for dirname, dirs, files in sorted_walk(base_dir): | |
497 visit(z, dirname, files) | |
498 z.close() | |
499 else: | |
500 for dirname, dirs, files in sorted_walk(base_dir): | |
501 visit(None, dirname, files) | |
502 return zip_filename |