guppy_basecaller: env/lib/python3.7/site-packages/setuptools/config.py comparison

comparison env/lib/python3.7/site-packages/setuptools/config.py @ 0:26e78fe6e8c4 draft

"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"

author	shellac
date	Sat, 02 May 2020 07:14:21 -0400
parents
children

comparison

equal deleted inserted replaced

--1:000000000000
+:26e78fe6e8c4
+from __future__ import absolute_import, unicode_literals
+import io
+import os
+import sys
+import warnings
+import functools
+from collections import defaultdict
+from functools import partial
+from functools import wraps
+from importlib import import_module
+from distutils.errors import DistutilsOptionError, DistutilsFileError
+from setuptools.extern.packaging.version import LegacyVersion, parse
+from setuptools.extern.six import string_types, PY3
+__metaclass__ = type
+def read_configuration(
+filepath, find_others=False, ignore_option_errors=False):
+"""Read given configuration file and returns options from it as a dict.
+:param str|unicode filepath: Path to configuration file
+to get options from.
+:param bool find_others: Whether to search for other configuration files
+which could be on in various places.
+:param bool ignore_option_errors: Whether to silently ignore
+options, values of which could not be resolved (e.g. due to exceptions
+in directives such as file:, attr:, etc.).
+If False exceptions are propagated as expected.
+:rtype: dict
+"""
+from setuptools.dist import Distribution, _Distribution
+filepath = os.path.abspath(filepath)
+if not os.path.isfile(filepath):
+raise DistutilsFileError(
+'Configuration file %s does not exist.' % filepath)
+current_directory = os.getcwd()
+os.chdir(os.path.dirname(filepath))
+try:
+dist = Distribution()
+filenames = dist.find_config_files() if find_others else []
+if filepath not in filenames:
+filenames.append(filepath)
+_Distribution.parse_config_files(dist, filenames=filenames)
+handlers = parse_configuration(
+dist, dist.command_options,
+ignore_option_errors=ignore_option_errors)
+finally:
+os.chdir(current_directory)
+return configuration_to_dict(handlers)
+def _get_option(target_obj, key):
+"""
+Given a target object and option key, get that option from
+the target object, either through a get_{key} method or
+from an attribute directly.
+"""
+getter_name = 'get_{key}'.format(**locals())
+by_attribute = functools.partial(getattr, target_obj, key)
+getter = getattr(target_obj, getter_name, by_attribute)
+return getter()
+def configuration_to_dict(handlers):
+"""Returns configuration data gathered by given handlers as a dict.
+:param list[ConfigHandler] handlers: Handlers list,
+usually from parse_configuration()
+:rtype: dict
+"""
+config_dict = defaultdict(dict)
+for handler in handlers:
+for option in handler.set_options:
+value = _get_option(handler.target_obj, option)
+config_dict[handler.section_prefix][option] = value
+return config_dict
+def parse_configuration(
+distribution, command_options, ignore_option_errors=False):
+"""Performs additional parsing of configuration options
+for a distribution.
+Returns a list of used option handlers.
+:param Distribution distribution:
+:param dict command_options:
+:param bool ignore_option_errors: Whether to silently ignore
+options, values of which could not be resolved (e.g. due to exceptions
+in directives such as file:, attr:, etc.).
+If False exceptions are propagated as expected.
+:rtype: list
+"""
+options = ConfigOptionsHandler(
+distribution, command_options, ignore_option_errors)
+options.parse()
+meta = ConfigMetadataHandler(
+distribution.metadata, command_options, ignore_option_errors,
+distribution.package_dir)
+meta.parse()
+return meta, options
+class ConfigHandler:
+"""Handles metadata supplied in configuration files."""
+section_prefix = None
+"""Prefix for config sections handled by this handler.
+Must be provided by class heirs.
+"""
+aliases = {}
+"""Options aliases.
+For compatibility with various packages. E.g.: d2to1 and pbr.
+Note: `-` in keys is replaced with `_` by config parser.
+"""
+def __init__(self, target_obj, options, ignore_option_errors=False):
+sections = {}
+section_prefix = self.section_prefix
+for section_name, section_options in options.items():
+if not section_name.startswith(section_prefix):
+continue
+section_name = section_name.replace(section_prefix, '').strip('.')
+sections[section_name] = section_options
+self.ignore_option_errors = ignore_option_errors
+self.target_obj = target_obj
+self.sections = sections
+self.set_options = []
+@property
+def parsers(self):
+"""Metadata item name to parser function mapping."""
+raise NotImplementedError(
+'%s must provide .parsers property' % self.__class__.__name__)
+def __setitem__(self, option_name, value):
+unknown = tuple()
+target_obj = self.target_obj
+# Translate alias into real name.
+option_name = self.aliases.get(option_name, option_name)
+current_value = getattr(target_obj, option_name, unknown)
+if current_value is unknown:
+raise KeyError(option_name)
+if current_value:
+# Already inhabited. Skipping.
+return
+skip_option = False
+parser = self.parsers.get(option_name)
+if parser:
+try:
+value = parser(value)
+except Exception:
+skip_option = True
+if not self.ignore_option_errors:
+raise
+if skip_option:
+return
+setter = getattr(target_obj, 'set_%s' % option_name, None)
+if setter is None:
+setattr(target_obj, option_name, value)
+else:
+setter(value)
+self.set_options.append(option_name)
+@classmethod
+def _parse_list(cls, value, separator=','):
+"""Represents value as a list.
+Value is split either by separator (defaults to comma) or by lines.
+:param value:
+:param separator: List items separator character.
+:rtype: list
+"""
+if isinstance(value, list):  # _get_parser_compound case
+return value
+if '\n' in value:
+value = value.splitlines()
+else:
+value = value.split(separator)
+return [chunk.strip() for chunk in value if chunk.strip()]
+@classmethod
+def _parse_dict(cls, value):
+"""Represents value as a dict.
+:param value:
+:rtype: dict
+"""
+separator = '='
+result = {}
+for line in cls._parse_list(value):
+key, sep, val = line.partition(separator)
+if sep != separator:
+raise DistutilsOptionError(
+'Unable to parse option value to dict: %s' % value)
+result[key.strip()] = val.strip()
+return result
+@classmethod
+def _parse_bool(cls, value):
+"""Represents value as boolean.
+:param value:
+:rtype: bool
+"""
+value = value.lower()
+return value in ('1', 'true', 'yes')
+@classmethod
+def _exclude_files_parser(cls, key):
+"""Returns a parser function to make sure field inputs
+are not files.
+Parses a value after getting the key so error messages are
+more informative.
+:param key:
+:rtype: callable
+"""
+def parser(value):
+exclude_directive = 'file:'
+if value.startswith(exclude_directive):
+raise ValueError(
+'Only strings are accepted for the {0} field, '
+'files are not accepted'.format(key))
+return value
+return parser
+@classmethod
+def _parse_file(cls, value):
+"""Represents value as a string, allowing including text
+from nearest files using `file:` directive.
+Directive is sandboxed and won't reach anything outside
+directory with setup.py.
+Examples:
+file: README.rst, CHANGELOG.md, src/file.txt
+:param str value:
+:rtype: str
+"""
+include_directive = 'file:'
+if not isinstance(value, string_types):
+return value
+if not value.startswith(include_directive):
+return value
+spec = value[len(include_directive):]
+filepaths = (os.path.abspath(path.strip()) for path in spec.split(','))
+return '\n'.join(
+cls._read_file(path)
+for path in filepaths
+if (cls._assert_local(path) or True)
+and os.path.isfile(path)
+)
+@staticmethod
+def _assert_local(filepath):
+if not filepath.startswith(os.getcwd()):
+raise DistutilsOptionError(
+'`file:` directive can not access %s' % filepath)
+@staticmethod
+def _read_file(filepath):
+with io.open(filepath, encoding='utf-8') as f:
+return f.read()
+@classmethod
+def _parse_attr(cls, value, package_dir=None):
+"""Represents value as a module attribute.
+Examples:
+attr: package.attr
+attr: package.module.attr
+:param str value:
+:rtype: str
+"""
+attr_directive = 'attr:'
+if not value.startswith(attr_directive):
+return value
+attrs_path = value.replace(attr_directive, '').strip().split('.')
+attr_name = attrs_path.pop()
+module_name = '.'.join(attrs_path)
+module_name = module_name or '__init__'
+parent_path = os.getcwd()
+if package_dir:
+if attrs_path[0] in package_dir:
+# A custom path was specified for the module we want to import
+custom_path = package_dir[attrs_path[0]]
+parts = custom_path.rsplit('/', 1)
+if len(parts) > 1:
+parent_path = os.path.join(os.getcwd(), parts[0])
+module_name = parts[1]
+else:
+module_name = custom_path
+elif '' in package_dir:
+# A custom parent directory was specified for all root modules
+parent_path = os.path.join(os.getcwd(), package_dir[''])
+sys.path.insert(0, parent_path)
+try:
+module = import_module(module_name)
+value = getattr(module, attr_name)
+finally:
+sys.path = sys.path[1:]
+return value
+@classmethod
+def _get_parser_compound(cls, *parse_methods):
+"""Returns parser function to represents value as a list.
+Parses a value applying given methods one after another.
+:param parse_methods:
+:rtype: callable
+"""
+def parse(value):
+parsed = value
+for method in parse_methods:
+parsed = method(parsed)
+return parsed
+return parse
+@classmethod
+def _parse_section_to_dict(cls, section_options, values_parser=None):
+"""Parses section options into a dictionary.
+Optionally applies a given parser to values.
+:param dict section_options:
+:param callable values_parser:
+:rtype: dict
+"""
+value = {}
+values_parser = values_parser or (lambda val: val)
+for key, (_, val) in section_options.items():
+value[key] = values_parser(val)
+return value
+def parse_section(self, section_options):
+"""Parses configuration file section.
+:param dict section_options:
+"""
+for (name, (_, value)) in section_options.items():
+try:
+self[name] = value
+except KeyError:
+pass  # Keep silent for a new option may appear anytime.
+def parse(self):
+"""Parses configuration file items from one
+or more related sections.
+"""
+for section_name, section_options in self.sections.items():
+method_postfix = ''
+if section_name:  # [section.option] variant
+method_postfix = '_%s' % section_name
+section_parser_method = getattr(
+self,
+# Dots in section names are translated into dunderscores.
+('parse_section%s' % method_postfix).replace('.', '__'),
+None)
+if section_parser_method is None:
+raise DistutilsOptionError(
+'Unsupported distribution option section: [%s.%s]' % (
+self.section_prefix, section_name))
+section_parser_method(section_options)
+def _deprecated_config_handler(self, func, msg, warning_class):
+""" this function will wrap around parameters that are deprecated
+:param msg: deprecation message
+:param warning_class: class of warning exception to be raised
+:param func: function to be wrapped around
+"""
+@wraps(func)
+def config_handler(*args, **kwargs):
+warnings.warn(msg, warning_class)
+return func(*args, **kwargs)
+return config_handler
+class ConfigMetadataHandler(ConfigHandler):
+section_prefix = 'metadata'
+aliases = {
+'home_page': 'url',
+'summary': 'description',
+'classifier': 'classifiers',
+'platform': 'platforms',
+}
+strict_mode = False
+"""We need to keep it loose, to be partially compatible with
+`pbr` and `d2to1` packages which also uses `metadata` section.
+"""
+def __init__(self, target_obj, options, ignore_option_errors=False,
+package_dir=None):
+super(ConfigMetadataHandler, self).__init__(target_obj, options,
+ignore_option_errors)
+self.package_dir = package_dir
+@property
+def parsers(self):
+"""Metadata item name to parser function mapping."""
+parse_list = self._parse_list
+parse_file = self._parse_file
+parse_dict = self._parse_dict
+exclude_files_parser = self._exclude_files_parser
+return {
+'platforms': parse_list,
+'keywords': parse_list,
+'provides': parse_list,
+'requires': self._deprecated_config_handler(
+parse_list,
+"The requires parameter is deprecated, please use "
+"install_requires for runtime dependencies.",
+DeprecationWarning),
+'obsoletes': parse_list,
+'classifiers': self._get_parser_compound(parse_file, parse_list),
+'license': exclude_files_parser('license'),
+'description': parse_file,
+'long_description': parse_file,
+'version': self._parse_version,
+'project_urls': parse_dict,
+}
+def _parse_version(self, value):
+"""Parses `version` option value.
+:param value:
+:rtype: str
+"""
+version = self._parse_file(value)
+if version != value:
+version = version.strip()
+# Be strict about versions loaded from file because it's easy to
+# accidentally include newlines and other unintended content
+if isinstance(parse(version), LegacyVersion):
+tmpl = (
+'Version loaded from {value} does not '
+'comply with PEP 440: {version}'
+)
+raise DistutilsOptionError(tmpl.format(**locals()))
+return version
+version = self._parse_attr(value, self.package_dir)
+if callable(version):
+version = version()
+if not isinstance(version, string_types):
+if hasattr(version, '__iter__'):
+version = '.'.join(map(str, version))
+else:
+version = '%s' % version
+return version
+class ConfigOptionsHandler(ConfigHandler):
+section_prefix = 'options'
+@property
+def parsers(self):
+"""Metadata item name to parser function mapping."""
+parse_list = self._parse_list
+parse_list_semicolon = partial(self._parse_list, separator=';')
+parse_bool = self._parse_bool
+parse_dict = self._parse_dict
+return {
+'zip_safe': parse_bool,
+'use_2to3': parse_bool,
+'include_package_data': parse_bool,
+'package_dir': parse_dict,
+'use_2to3_fixers': parse_list,
+'use_2to3_exclude_fixers': parse_list,
+'convert_2to3_doctests': parse_list,
+'scripts': parse_list,
+'eager_resources': parse_list,
+'dependency_links': parse_list,
+'namespace_packages': parse_list,
+'install_requires': parse_list_semicolon,
+'setup_requires': parse_list_semicolon,
+'tests_require': parse_list_semicolon,
+'packages': self._parse_packages,
+'entry_points': self._parse_file,
+'py_modules': parse_list,
+}
+def _parse_packages(self, value):
+"""Parses `packages` option value.
+:param value:
+:rtype: list
+"""
+find_directives = ['find:', 'find_namespace:']
+trimmed_value = value.strip()
+if trimmed_value not in find_directives:
+return self._parse_list(value)
+findns = trimmed_value == find_directives[1]
+if findns and not PY3:
+raise DistutilsOptionError(
+'find_namespace: directive is unsupported on Python < 3.3')
+# Read function arguments from a dedicated section.
+find_kwargs = self.parse_section_packages__find(
+self.sections.get('packages.find', {}))
+if findns:
+from setuptools import find_namespace_packages as find_packages
+else:
+from setuptools import find_packages
+return find_packages(**find_kwargs)
+def parse_section_packages__find(self, section_options):
+"""Parses `packages.find` configuration file section.
+To be used in conjunction with _parse_packages().
+:param dict section_options:
+"""
+section_data = self._parse_section_to_dict(
+section_options, self._parse_list)
+valid_keys = ['where', 'include', 'exclude']
+find_kwargs = dict(
+[(k, v) for k, v in section_data.items() if k in valid_keys and v])
+where = find_kwargs.get('where')
+if where is not None:
+find_kwargs['where'] = where[0]  # cast list to single val
+return find_kwargs
+def parse_section_entry_points(self, section_options):
+"""Parses `entry_points` configuration file section.
+:param dict section_options:
+"""
+parsed = self._parse_section_to_dict(section_options, self._parse_list)
+self['entry_points'] = parsed
+def _parse_package_data(self, section_options):
+parsed = self._parse_section_to_dict(section_options, self._parse_list)
+root = parsed.get('*')
+if root:
+parsed[''] = root
+del parsed['*']
+return parsed
+def parse_section_package_data(self, section_options):
+"""Parses `package_data` configuration file section.
+:param dict section_options:
+"""
+self['package_data'] = self._parse_package_data(section_options)
+def parse_section_exclude_package_data(self, section_options):
+"""Parses `exclude_package_data` configuration file section.
+:param dict section_options:
+"""
+self['exclude_package_data'] = self._parse_package_data(
+section_options)
+def parse_section_extras_require(self, section_options):
+"""Parses `extras_require` configuration file section.
+:param dict section_options:
+"""
+parse_list = partial(self._parse_list, separator=';')
+self['extras_require'] = self._parse_section_to_dict(
+section_options, parse_list)
+def parse_section_data_files(self, section_options):
+"""Parses `data_files` configuration file section.
+:param dict section_options:
+"""
+parsed = self._parse_section_to_dict(section_options, self._parse_list)
+self['data_files'] = [(k, v) for k, v in parsed.items()]

Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/setuptools/config.py @ 0:26e78fe6e8c4 draft