Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/zipp.py @ 0:26e78fe6e8c4 draft

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"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author shellac
date Sat, 02 May 2020 07:14:21 -0400
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-1:000000000000 0:26e78fe6e8c4
1 import io
2 import posixpath
3 import zipfile
4 import itertools
5 import contextlib
6 import sys
7
8 if sys.version_info < (3, 7):
9 from collections import OrderedDict
10 else:
11 OrderedDict = dict
12
13
14 def _parents(path):
15 """
16 Given a path with elements separated by
17 posixpath.sep, generate all parents of that path.
18
19 >>> list(_parents('b/d'))
20 ['b']
21 >>> list(_parents('/b/d/'))
22 ['/b']
23 >>> list(_parents('b/d/f/'))
24 ['b/d', 'b']
25 >>> list(_parents('b'))
26 []
27 >>> list(_parents(''))
28 []
29 """
30 return itertools.islice(_ancestry(path), 1, None)
31
32
33 def _ancestry(path):
34 """
35 Given a path with elements separated by
36 posixpath.sep, generate all elements of that path
37
38 >>> list(_ancestry('b/d'))
39 ['b/d', 'b']
40 >>> list(_ancestry('/b/d/'))
41 ['/b/d', '/b']
42 >>> list(_ancestry('b/d/f/'))
43 ['b/d/f', 'b/d', 'b']
44 >>> list(_ancestry('b'))
45 ['b']
46 >>> list(_ancestry(''))
47 []
48 """
49 path = path.rstrip(posixpath.sep)
50 while path and path != posixpath.sep:
51 yield path
52 path, tail = posixpath.split(path)
53
54
55 _dedupe = OrderedDict.fromkeys
56 """Deduplicate an iterable in original order"""
57
58
59 def _difference(minuend, subtrahend):
60 """
61 Return items in minuend not in subtrahend, retaining order
62 with O(1) lookup.
63 """
64 return itertools.filterfalse(set(subtrahend).__contains__, minuend)
65
66
67 class CompleteDirs(zipfile.ZipFile):
68 """
69 A ZipFile subclass that ensures that implied directories
70 are always included in the namelist.
71 """
72
73 @staticmethod
74 def _implied_dirs(names):
75 parents = itertools.chain.from_iterable(map(_parents, names))
76 as_dirs = (p + posixpath.sep for p in parents)
77 return _dedupe(_difference(as_dirs, names))
78
79 def namelist(self):
80 names = super(CompleteDirs, self).namelist()
81 return names + list(self._implied_dirs(names))
82
83 def _name_set(self):
84 return set(self.namelist())
85
86 def resolve_dir(self, name):
87 """
88 If the name represents a directory, return that name
89 as a directory (with the trailing slash).
90 """
91 names = self._name_set()
92 dirname = name + '/'
93 dir_match = name not in names and dirname in names
94 return dirname if dir_match else name
95
96 @classmethod
97 def make(cls, source):
98 """
99 Given a source (filename or zipfile), return an
100 appropriate CompleteDirs subclass.
101 """
102 if isinstance(source, CompleteDirs):
103 return source
104
105 if not isinstance(source, zipfile.ZipFile):
106 return cls(_pathlib_compat(source))
107
108 # Only allow for FastPath when supplied zipfile is read-only
109 if 'r' not in source.mode:
110 cls = CompleteDirs
111
112 res = cls.__new__(cls)
113 vars(res).update(vars(source))
114 return res
115
116
117 class FastLookup(CompleteDirs):
118 """
119 ZipFile subclass to ensure implicit
120 dirs exist and are resolved rapidly.
121 """
122 def namelist(self):
123 with contextlib.suppress(AttributeError):
124 return self.__names
125 self.__names = super(FastLookup, self).namelist()
126 return self.__names
127
128 def _name_set(self):
129 with contextlib.suppress(AttributeError):
130 return self.__lookup
131 self.__lookup = super(FastLookup, self)._name_set()
132 return self.__lookup
133
134
135 def _pathlib_compat(path):
136 """
137 For path-like objects, convert to a filename for compatibility
138 on Python 3.6.1 and earlier.
139 """
140 try:
141 return path.__fspath__()
142 except AttributeError:
143 return str(path)
144
145
146 class Path:
147 """
148 A pathlib-compatible interface for zip files.
149
150 Consider a zip file with this structure::
151
152 .
153 ├── a.txt
154 └── b
155 ├── c.txt
156 └── d
157 └── e.txt
158
159 >>> data = io.BytesIO()
160 >>> zf = zipfile.ZipFile(data, 'w')
161 >>> zf.writestr('a.txt', 'content of a')
162 >>> zf.writestr('b/c.txt', 'content of c')
163 >>> zf.writestr('b/d/e.txt', 'content of e')
164 >>> zf.filename = 'abcde.zip'
165
166 Path accepts the zipfile object itself or a filename
167
168 >>> root = Path(zf)
169
170 From there, several path operations are available.
171
172 Directory iteration (including the zip file itself):
173
174 >>> a, b = root.iterdir()
175 >>> a
176 Path('abcde.zip', 'a.txt')
177 >>> b
178 Path('abcde.zip', 'b/')
179
180 name property:
181
182 >>> b.name
183 'b'
184
185 join with divide operator:
186
187 >>> c = b / 'c.txt'
188 >>> c
189 Path('abcde.zip', 'b/c.txt')
190 >>> c.name
191 'c.txt'
192
193 Read text:
194
195 >>> c.read_text()
196 'content of c'
197
198 existence:
199
200 >>> c.exists()
201 True
202 >>> (b / 'missing.txt').exists()
203 False
204
205 Coercion to string:
206
207 >>> str(c)
208 'abcde.zip/b/c.txt'
209 """
210
211 __repr = "{self.__class__.__name__}({self.root.filename!r}, {self.at!r})"
212
213 def __init__(self, root, at=""):
214 self.root = FastLookup.make(root)
215 self.at = at
216
217 def open(self, mode='r', *args, pwd=None, **kwargs):
218 """
219 Open this entry as text or binary following the semantics
220 of ``pathlib.Path.open()`` by passing arguments through
221 to io.TextIOWrapper().
222 """
223 if self.is_dir():
224 raise IsADirectoryError(self)
225 zip_mode = mode[0]
226 if not self.exists() and zip_mode == 'r':
227 raise FileNotFoundError(self)
228 stream = self.root.open(self.at, zip_mode, pwd=pwd)
229 if 'b' in mode:
230 if args or kwargs:
231 raise ValueError("encoding args invalid for binary operation")
232 return stream
233 return io.TextIOWrapper(stream, *args, **kwargs)
234
235 @property
236 def name(self):
237 return posixpath.basename(self.at.rstrip("/"))
238
239 def read_text(self, *args, **kwargs):
240 with self.open('r', *args, **kwargs) as strm:
241 return strm.read()
242
243 def read_bytes(self):
244 with self.open('rb') as strm:
245 return strm.read()
246
247 def _is_child(self, path):
248 return posixpath.dirname(path.at.rstrip("/")) == self.at.rstrip("/")
249
250 def _next(self, at):
251 return Path(self.root, at)
252
253 def is_dir(self):
254 return not self.at or self.at.endswith("/")
255
256 def is_file(self):
257 return not self.is_dir()
258
259 def exists(self):
260 return self.at in self.root._name_set()
261
262 def iterdir(self):
263 if not self.is_dir():
264 raise ValueError("Can't listdir a file")
265 subs = map(self._next, self.root.namelist())
266 return filter(self._is_child, subs)
267
268 def __str__(self):
269 return posixpath.join(self.root.filename, self.at)
270
271 def __repr__(self):
272 return self.__repr.format(self=self)
273
274 def joinpath(self, add):
275 next = posixpath.join(self.at, _pathlib_compat(add))
276 return self._next(self.root.resolve_dir(next))
277
278 __truediv__ = joinpath
279
280 @property
281 def parent(self):
282 parent_at = posixpath.dirname(self.at.rstrip('/'))
283 if parent_at:
284 parent_at += '/'
285 return self._next(parent_at)