Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/planemo/engine/toil.py @ 2:6af9afd405e9 draft
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
| author | shellac |
|---|---|
| date | Thu, 14 May 2020 14:56:58 -0400 |
| parents | 26e78fe6e8c4 |
| children |
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| 1:75ca89e9b81c | 2:6af9afd405e9 |
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| 1 """Module contianing the :class:`ToilEngine` implementation of :class:`Engine`.""" | |
| 2 | |
| 3 from planemo import cwl | |
| 4 from planemo.runnable import RunnableType | |
| 5 from .interface import BaseEngine | |
| 6 | |
| 7 | |
| 8 class ToilEngine(BaseEngine): | |
| 9 """An :class:`Engine` implementation backed by Toil. | |
| 10 | |
| 11 More information on toil can be found at https://github.com/BD2KGenomics/toil. | |
| 12 """ | |
| 13 | |
| 14 handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] | |
| 15 | |
| 16 def _run(self, runnable, job_path): | |
| 17 """Run CWL job using Toil.""" | |
| 18 path = runnable.path | |
| 19 return cwl.run_toil(self._ctx, path, job_path, **self._kwds) | |
| 20 | |
| 21 | |
| 22 __all__ = ( | |
| 23 "ToilEngine", | |
| 24 ) |