Mercurial > repos > shellac > guppy_basecaller

comparison guppy_basecaller.xml @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
children 758bc20232e8
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1:75ca89e9b81c 2:6af9afd405e9
10 <inputs> 10 <inputs>
11 <param name="infile" type="data" format="h5" label="Fast5 input"/> 11 <param name="infile" type="data" format="h5" label="Fast5 input"/>
12 <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/> 12 <param name="config" type="data" format="tar" label="Guppy basecall configuration model"/>
13 </inputs> 13 </inputs>
14 <outputs> 14 <outputs>
15 <data name="results" format="fastq"> 15 <!--<data name="results" format="fastq">
16 <discover_datasets directory="out" ext="fastq" pattern=".+\.fastq" visible="true"/> 16 <discover_datasets directory="out" ext="fastq" pattern=".+\.fastq" visible="true"/>
17 </data> 17 </data>-->
18 <data format="fastq" name="output" label="Modified FASTQ"/>
18 </outputs> 19 </outputs>
19 <help><![CDATA[ 20 <help><![CDATA[
20 A wrapper for guppy basecaller. This expects two inputs: a fast5 file, and a configuration in the form of a tar file. 21 A wrapper for guppy basecaller. This expects two inputs: a fast5 file, and a configuration in the form of a tar file.
21 22
22 You can find configurations at https://github.com/nanoporetech/rerio, and in particular the directory https://github.com/nanoporetech/rerio/basecall_models. 23 You can find configurations at https://github.com/nanoporetech/rerio, and in particular the directory https://github.com/nanoporetech/rerio/basecall_models.