Mercurial > repos > shellac > guppy_basecaller

comparison env/bin/instance_events @ 5:9b1c78e6ba9c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
comparison
equal deleted inserted replaced
4:79f47841a781 5:9b1c78e6ba9c
1 #!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
2 # Copyright (c) 2011 Jim Browne http://www.42lines.net
3 # Borrows heavily from boto/bin/list_instances which has no attribution
4 #
5 # Permission is hereby granted, free of charge, to any person obtaining a
6 # copy of this software and associated documentation files (the
7 # "Software"), to deal in the Software without restriction, including
8 # without limitation the rights to use, copy, modify, merge, publish, dis-
9 # tribute, sublicense, and/or sell copies of the Software, and to permit
10 # persons to whom the Software is furnished to do so, subject to the fol-
11 # lowing conditions:
12 #
13 # The above copyright notice and this permission notice shall be included
14 # in all copies or substantial portions of the Software.
15 #
16 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
17 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
18 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
19 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
20 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
22
23 VERSION="0.1"
24 usage = """%prog [options]
25 Options:
26 -h, --help show help message (including options list) and exit
27 """
28
29 from operator import itemgetter
30
31 HEADERS = {
32 'ID': {'get': itemgetter('id'), 'length':14},
33 'Zone': {'get': itemgetter('zone'), 'length':14},
34 'Hostname': {'get': itemgetter('dns'), 'length':20},
35 'Code': {'get': itemgetter('code'), 'length':18},
36 'Description': {'get': itemgetter('description'), 'length':30},
37 'NotBefore': {'get': itemgetter('not_before'), 'length':25},
38 'NotAfter': {'get': itemgetter('not_after'), 'length':25},
39 'T:': {'length': 30},
40 }
41
42 def get_column(name, event=None):
43 if name.startswith('T:'):
44 return event[name]
45 return HEADERS[name]['get'](event)
46
47 def list(region, headers, order, completed):
48 """List status events for all instances in a given region"""
49
50 import re
51
52 ec2 = boto.connect_ec2(region=region)
53
54 reservations = ec2.get_all_reservations()
55
56 instanceinfo = {}
57 events = {}
58
59 displaytags = [ x for x in headers if x.startswith('T:') ]
60
61 # Collect the tag for every possible instance
62 for res in reservations:
63 for instance in res.instances:
64 iid = instance.id
65 instanceinfo[iid] = {}
66 for tagname in displaytags:
67 _, tag = tagname.split(':', 1)
68 instanceinfo[iid][tagname] = instance.tags.get(tag,'')
69 instanceinfo[iid]['dns'] = instance.public_dns_name
70
71 stats = ec2.get_all_instance_status()
72
73 for stat in stats:
74 if stat.events:
75 for event in stat.events:
76 events[stat.id] = {}
77 events[stat.id]['id'] = stat.id
78 events[stat.id]['dns'] = instanceinfo[stat.id]['dns']
79 events[stat.id]['zone'] = stat.zone
80 for tag in displaytags:
81 events[stat.id][tag] = instanceinfo[stat.id][tag]
82 events[stat.id]['code'] = event.code
83 events[stat.id]['description'] = event.description
84 events[stat.id]['not_before'] = event.not_before
85 events[stat.id]['not_after'] = event.not_after
86 if completed and re.match('^\[Completed\]',event.description):
87 events[stat.id]['not_before'] = 'Completed'
88 events[stat.id]['not_after'] = 'Completed'
89
90 # Create format string
91 format_string = ""
92 for h in headers:
93 if h.startswith('T:'):
94 format_string += "%%-%ds" % HEADERS['T:']['length']
95 else:
96 format_string += "%%-%ds" % HEADERS[h]['length']
97
98
99 print format_string % headers
100 print "-" * len(format_string % headers)
101
102 for instance in sorted(events,
103 key=lambda ev: get_column(order, events[ev])):
104 e = events[instance]
105 print format_string % tuple(get_column(h, e) for h in headers)
106
107 if __name__ == "__main__":
108 import boto
109 from optparse import OptionParser
110 from boto.ec2 import regions
111
112 parser = OptionParser(version=VERSION, usage=usage)
113 parser.add_option("-a", "--all", help="check all regions", dest="all", default=False,action="store_true")
114 parser.add_option("-r", "--region", help="region to check (default us-east-1)", dest="region", default="us-east-1")
115 parser.add_option("-H", "--headers", help="Set headers (use 'T:tagname' for including tags)", default=None, action="store", dest="headers", metavar="ID,Zone,Hostname,Code,Description,NotBefore,NotAfter,T:Name")
116 parser.add_option("-S", "--sort", help="Header for sort order", default=None, action="store", dest="order",metavar="HeaderName")
117 parser.add_option("-c", "--completed", help="List time fields as \"Completed\" for completed events (Default: false)", default=False, action="store_true", dest="completed")
118
119 (options, args) = parser.parse_args()
120
121 if options.headers:
122 headers = tuple(options.headers.split(','))
123 else:
124 headers = ('ID', 'Zone', 'Hostname', 'Code', 'NotBefore', 'NotAfter')
125
126 if options.order:
127 order = options.order
128 else:
129 order = 'ID'
130
131 if options.all:
132 for r in regions():
133 print "Region %s" % r.name
134 list(r, headers, order, options.completed)
135 else:
136 # Connect the region
137 for r in regions():
138 if r.name == options.region:
139 region = r
140 break
141 else:
142 print "Region %s not found." % options.region
143 sys.exit(1)
144
145 list(r, headers, order, options.completed)