Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/boto/pyami/config.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
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4:79f47841a781 | 5:9b1c78e6ba9c |
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1 # Copyright (c) 2006,2007 Mitch Garnaat http://garnaat.org/ | |
2 # Copyright (c) 2011 Chris Moyer http://coredumped.org/ | |
3 # | |
4 # Permission is hereby granted, free of charge, to any person obtaining a | |
5 # copy of this software and associated documentation files (the | |
6 # "Software"), to deal in the Software without restriction, including | |
7 # without limitation the rights to use, copy, modify, merge, publish, dis- | |
8 # tribute, sublicense, and/or sell copies of the Software, and to permit | |
9 # persons to whom the Software is furnished to do so, subject to the fol- | |
10 # lowing conditions: | |
11 # | |
12 # The above copyright notice and this permission notice shall be included | |
13 # in all copies or substantial portions of the Software. | |
14 # | |
15 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS | |
16 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- | |
17 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT | |
18 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, | |
19 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | |
20 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS | |
21 # IN THE SOFTWARE. | |
22 # | |
23 import os | |
24 import re | |
25 import warnings | |
26 | |
27 import boto | |
28 | |
29 from boto.compat import expanduser, ConfigParser, NoOptionError, NoSectionError, StringIO | |
30 | |
31 | |
32 # By default we use two locations for the boto configurations, | |
33 # /etc/boto.cfg and ~/.boto (which works on Windows and Unix). | |
34 BotoConfigPath = '/etc/boto.cfg' | |
35 BotoConfigLocations = [BotoConfigPath] | |
36 UserConfigPath = os.path.join(expanduser('~'), '.boto') | |
37 BotoConfigLocations.append(UserConfigPath) | |
38 | |
39 # If there's a BOTO_CONFIG variable set, we load ONLY | |
40 # that variable | |
41 if 'BOTO_CONFIG' in os.environ: | |
42 BotoConfigLocations = [expanduser(os.environ['BOTO_CONFIG'])] | |
43 | |
44 # If there's a BOTO_PATH variable set, we use anything there | |
45 # as the current configuration locations, split with os.pathsep. | |
46 elif 'BOTO_PATH' in os.environ: | |
47 BotoConfigLocations = [] | |
48 for path in os.environ['BOTO_PATH'].split(os.pathsep): | |
49 BotoConfigLocations.append(expanduser(path)) | |
50 | |
51 | |
52 class Config(object): | |
53 | |
54 def __init__(self, path=None, fp=None, do_load=True): | |
55 self._parser = ConfigParser({'working_dir': '/mnt/pyami', | |
56 'debug': '0'}) | |
57 if do_load: | |
58 if path: | |
59 self.load_from_path(path) | |
60 elif fp: | |
61 self.readfp(fp) | |
62 else: | |
63 self.read(BotoConfigLocations) | |
64 if "AWS_CREDENTIAL_FILE" in os.environ: | |
65 full_path = expanduser(os.environ['AWS_CREDENTIAL_FILE']) | |
66 try: | |
67 self.load_credential_file(full_path) | |
68 except IOError: | |
69 warnings.warn('Unable to load AWS_CREDENTIAL_FILE (%s)' % full_path) | |
70 | |
71 def __setstate__(self, state): | |
72 # There's test that verify that (transitively) a Config | |
73 # object can be pickled. Now that we're storing a _parser | |
74 # attribute and relying on __getattr__ to proxy requests, | |
75 # we need to implement setstate to ensure we don't get | |
76 # into recursive loops when looking up _parser when | |
77 # this object is unpickled. | |
78 self._parser = state['_parser'] | |
79 | |
80 def __getattr__(self, name): | |
81 return getattr(self._parser, name) | |
82 | |
83 def has_option(self, *args, **kwargs): | |
84 return self._parser.has_option(*args, **kwargs) | |
85 | |
86 def load_credential_file(self, path): | |
87 """Load a credential file as is setup like the Java utilities""" | |
88 c_data = StringIO() | |
89 c_data.write("[Credentials]\n") | |
90 for line in open(path, "r").readlines(): | |
91 c_data.write(line.replace("AWSAccessKeyId", "aws_access_key_id").replace("AWSSecretKey", "aws_secret_access_key")) | |
92 c_data.seek(0) | |
93 self.readfp(c_data) | |
94 | |
95 def load_from_path(self, path): | |
96 file = open(path) | |
97 for line in file.readlines(): | |
98 match = re.match("^#import[\s\t]*([^\s^\t]*)[\s\t]*$", line) | |
99 if match: | |
100 extended_file = match.group(1) | |
101 (dir, file) = os.path.split(path) | |
102 self.load_from_path(os.path.join(dir, extended_file)) | |
103 self.read(path) | |
104 | |
105 def save_option(self, path, section, option, value): | |
106 """ | |
107 Write the specified Section.Option to the config file specified by path. | |
108 Replace any previous value. If the path doesn't exist, create it. | |
109 Also add the option the the in-memory config. | |
110 """ | |
111 config = ConfigParser() | |
112 config.read(path) | |
113 if not config.has_section(section): | |
114 config.add_section(section) | |
115 config.set(section, option, value) | |
116 fp = open(path, 'w') | |
117 config.write(fp) | |
118 fp.close() | |
119 if not self.has_section(section): | |
120 self.add_section(section) | |
121 self.set(section, option, value) | |
122 | |
123 def save_user_option(self, section, option, value): | |
124 self.save_option(UserConfigPath, section, option, value) | |
125 | |
126 def save_system_option(self, section, option, value): | |
127 self.save_option(BotoConfigPath, section, option, value) | |
128 | |
129 def get_instance(self, name, default=None): | |
130 try: | |
131 val = self.get('Instance', name) | |
132 except (NoOptionError, NoSectionError): | |
133 val = default | |
134 return val | |
135 | |
136 def get_user(self, name, default=None): | |
137 try: | |
138 val = self.get('User', name) | |
139 except (NoOptionError, NoSectionError): | |
140 val = default | |
141 return val | |
142 | |
143 def getint_user(self, name, default=0): | |
144 try: | |
145 val = self.getint('User', name) | |
146 except (NoOptionError, NoSectionError): | |
147 val = default | |
148 return val | |
149 | |
150 def get_value(self, section, name, default=None): | |
151 return self.get(section, name, default) | |
152 | |
153 def get(self, section, name, default=None): | |
154 try: | |
155 return self._parser.get(section, name) | |
156 except (NoOptionError, NoSectionError): | |
157 return default | |
158 | |
159 def getint(self, section, name, default=0): | |
160 try: | |
161 return self._parser.getint(section, name) | |
162 except (NoOptionError, NoSectionError): | |
163 return int(default) | |
164 | |
165 def getfloat(self, section, name, default=0.0): | |
166 try: | |
167 return self._parser.getfloat(section, name) | |
168 except (NoOptionError, NoSectionError): | |
169 return float(default) | |
170 | |
171 def getbool(self, section, name, default=False): | |
172 if self.has_option(section, name): | |
173 val = self.get(section, name) | |
174 if val.lower() == 'true': | |
175 val = True | |
176 else: | |
177 val = False | |
178 else: | |
179 val = default | |
180 return val | |
181 | |
182 def setbool(self, section, name, value): | |
183 if value: | |
184 self.set(section, name, 'true') | |
185 else: | |
186 self.set(section, name, 'false') | |
187 | |
188 def dump(self): | |
189 s = StringIO() | |
190 self.write(s) | |
191 print(s.getvalue()) | |
192 | |
193 def dump_safe(self, fp=None): | |
194 if not fp: | |
195 fp = StringIO() | |
196 for section in self.sections(): | |
197 fp.write('[%s]\n' % section) | |
198 for option in self.options(section): | |
199 if option == 'aws_secret_access_key': | |
200 fp.write('%s = xxxxxxxxxxxxxxxxxx\n' % option) | |
201 else: | |
202 fp.write('%s = %s\n' % (option, self.get(section, option))) | |
203 | |
204 def dump_to_sdb(self, domain_name, item_name): | |
205 from boto.compat import json | |
206 sdb = boto.connect_sdb() | |
207 domain = sdb.lookup(domain_name) | |
208 if not domain: | |
209 domain = sdb.create_domain(domain_name) | |
210 item = domain.new_item(item_name) | |
211 item.active = False | |
212 for section in self.sections(): | |
213 d = {} | |
214 for option in self.options(section): | |
215 d[option] = self.get(section, option) | |
216 item[section] = json.dumps(d) | |
217 item.save() | |
218 | |
219 def load_from_sdb(self, domain_name, item_name): | |
220 from boto.compat import json | |
221 sdb = boto.connect_sdb() | |
222 domain = sdb.lookup(domain_name) | |
223 item = domain.get_item(item_name) | |
224 for section in item.keys(): | |
225 if not self.has_section(section): | |
226 self.add_section(section) | |
227 d = json.loads(item[section]) | |
228 for attr_name in d.keys(): | |
229 attr_value = d[attr_name] | |
230 if attr_value is None: | |
231 attr_value = 'None' | |
232 if isinstance(attr_value, bool): | |
233 self.setbool(section, attr_name, attr_value) | |
234 else: | |
235 self.set(section, attr_name, attr_value) |