Mercurial > repos > shellac > guppy_basecaller

comparison env/lib/python3.7/site-packages/cwltool/tests/subgraph/count-lines1-wf.cwl @ 5:9b1c78e6ba9c draft default tip

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"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
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4:79f47841a781 5:9b1c78e6ba9c
1 #!/usr/bin/env cwl-runner
2 class: Workflow
3 cwlVersion: v1.0
4
5 inputs:
6 file1:
7 type: File
8 file2:
9 type: File
10 file3:
11 type: File
12
13 outputs:
14 count_output:
15 type: int
16 outputSource: step2/output
17
18 output3:
19 type: File
20 outputSource: step3/output
21
22 output4:
23 type: int
24 outputSource: step4/output
25
26 output5:
27 type: File
28 outputSource: step5/output
29
30 steps:
31 step1:
32 run: wc-tool.cwl
33 in:
34 file1: file1
35 out: [output]
36
37 step2:
38 run: parseInt-tool.cwl
39 in:
40 file1: step1/output
41 out: [output]
42
43 step3:
44 label: step that is independent of step1 and step2
45 run: wc-tool.cwl
46 in:
47 file1: file2
48 out: [output]
49
50 step4:
51 label: step that also depends on step1
52 run: parseInt-tool.cwl
53 in:
54 file1: step1/output
55 out: [output]
56
57 step5:
58 label: step with two inputs
59 run: wc-tool.cwl
60 in:
61 file1: file1
62 file3: file3
63 out: [output]