Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/gxformat2/_labels.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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| 4:79f47841a781 | 5:9b1c78e6ba9c |
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| 1 """Utilities for handling unlabelled objects when translating workflow formats.""" | |
| 2 | |
| 3 | |
| 4 class Labels(object): | |
| 5 """Track labels assigned and generate anonymous ones.""" | |
| 6 | |
| 7 def __init__(self): | |
| 8 """Initialize labels that have been encountered or generated.""" | |
| 9 self.seen_labels = set() | |
| 10 self.anonymous_labels = 0 | |
| 11 | |
| 12 def ensure_new_output_label(self, label): | |
| 13 """Ensure supplied label has value or generate an anonymous one.""" | |
| 14 if label is None: | |
| 15 self.anonymous_labels += 1 | |
| 16 label = "_anonymous_output_%d" % self.anonymous_labels | |
| 17 assert label not in self.seen_labels | |
| 18 self.seen_labels.add(label) | |
| 19 return label | |
| 20 | |
| 21 @staticmethod | |
| 22 def is_anonymous_output_label(label): | |
| 23 """Predicate determining if supplied label was generated for anonymous output.""" | |
| 24 # label likely can't be null according to the schema definition - but we've got a test | |
| 25 # in Galaxy that doesn't define a label in order to great a .ga file without output | |
| 26 # labels (which is completely normal). | |
| 27 return not label or label.startswith("_anonymous_output_") |