Mercurial > repos > shellac > guppy_basecaller
comparison env/lib/python3.7/site-packages/planemo/engine/cwltool.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
| author | shellac |
|---|---|
| date | Mon, 01 Jun 2020 08:59:25 -0400 |
| parents | 79f47841a781 |
| children |
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| 4:79f47841a781 | 5:9b1c78e6ba9c |
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| 1 """Module contianing the :class:`CwlToolEngine` implementation of :class:`Engine`.""" | |
| 2 | |
| 3 from planemo import cwl | |
| 4 from planemo.runnable import RunnableType | |
| 5 from .interface import BaseEngine | |
| 6 | |
| 7 | |
| 8 class CwlToolEngine(BaseEngine): | |
| 9 """An :class:`Engine` implementation backed by cwltool. | |
| 10 | |
| 11 More information on cwltool can be found at https://github.com/common-workflow-language/cwltool. | |
| 12 """ | |
| 13 | |
| 14 handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] | |
| 15 | |
| 16 def _run(self, runnable, job_path): | |
| 17 """Run CWL job using cwltool.""" | |
| 18 path = runnable.path | |
| 19 return cwl.run_cwltool(self._ctx, path, job_path, **self._kwds) | |
| 20 | |
| 21 | |
| 22 __all__ = ( | |
| 23 "CwlToolEngine", | |
| 24 ) |