--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/bin/cq	Sat May 02 07:14:21 2020 -0400
@@ -0,0 +1,92 @@
+#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
+# Copyright (c) 2006,2007 Mitch Garnaat http://garnaat.org/
+#
+# Permission is hereby granted, free of charge, to any person obtaining a
+# copy of this software and associated documentation files (the
+# "Software"), to deal in the Software without restriction, including
+# without limitation the rights to use, copy, modify, merge, publish, dis-
+# tribute, sublicense, and/or sell copies of the Software, and to permit
+# persons to whom the Software is furnished to do so, subject to the fol-
+# lowing conditions:
+#
+# The above copyright notice and this permission notice shall be included
+# in all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
+# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
+# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, 
+# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
+# IN THE SOFTWARE.
+#
+import getopt, sys
+import boto.sqs
+from boto.sqs.connection import SQSConnection
+from boto.exception import SQSError
+
+def usage():
+    print 'cq [-c] [-q queue_name] [-o output_file] [-t timeout] [-r region]'
+  
+def main():
+    try:
+        opts, args = getopt.getopt(sys.argv[1:], 'hcq:o:t:r:',
+                                   ['help', 'clear', 'queue=',
+                                    'output=', 'timeout=', 'region='])
+    except:
+        usage()
+        sys.exit(2)
+    queue_name = ''
+    output_file = ''
+    timeout = 30
+    region = ''
+    clear = False
+    for o, a in opts:
+        if o in ('-h', '--help'):
+            usage()
+            sys.exit()
+        if o in ('-q', '--queue'):
+            queue_name = a
+        if o in ('-o', '--output'):
+            output_file = a
+        if o in ('-c', '--clear'):
+            clear = True
+        if o in ('-t', '--timeout'):
+            timeout = int(a)
+        if o in ('-r', '--region'):
+            region = a
+    if region:
+        c = boto.sqs.connect_to_region(region)
+    if c is None:
+        print 'Invalid region (%s)' % region
+        sys.exit(1)
+    else:
+        c = SQSConnection()
+    if queue_name:
+        try:
+            rs = [c.create_queue(queue_name)]
+        except SQSError as e:
+            print 'An Error Occurred:'
+            print '%s: %s' % (e.status, e.reason)
+            print e.body
+            sys.exit()
+    else:
+        try:
+            rs = c.get_all_queues()
+        except SQSError as e:
+            print 'An Error Occurred:'
+            print '%s: %s' % (e.status, e.reason)
+            print e.body
+            sys.exit()
+    for q in rs:
+        if clear:
+            n = q.clear()
+            print 'clearing %d messages from %s' % (n, q.id)
+        elif output_file:
+            q.dump(output_file)
+        else:
+            print q.id, q.count(vtimeout=timeout)
+
+if __name__ == "__main__":
+    main()
+