Mercurial > repos > shellac > guppy_basecaller
diff env/bin/pyami_sendmail @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/bin/pyami_sendmail Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,52 @@ +#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 +# Copyright (c) 2010 Chris Moyer http://coredumped.org/ +# +# Permission is hereby granted, free of charge, to any person obtaining a +# copy of this software and associated documentation files (the +# "Software"), to deal in the Software without restriction, including +# without limitation the rights to use, copy, modify, merge, publish, dis- +# tribute, sublicense, and/or sell copies of the Software, and to permit +# persons to whom the Software is furnished to do so, subject to the fol- +# lowing conditions: +# +# The above copyright notice and this permission notice shall be included +# in all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- +# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT +# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, +# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS + +# +# Send Mail from a PYAMI instance, or anything that has a boto.cfg +# properly set up +# +VERSION="0.1" +usage = """%prog [options] +Sends whatever is on stdin to the recipient specified by your boto.cfg +or whoevery you specify in the options here. +""" + +if __name__ == "__main__": + from boto.utils import notify + import sys + from optparse import OptionParser + parser = OptionParser(version=VERSION, usage=usage) + parser.add_option("-t", "--to", help="Optional to address to send to (default from your boto.cfg)", action="store", default=None, dest="to") + parser.add_option("-s", "--subject", help="Optional Subject to send this report as", action="store", default="Report", dest="subject") + parser.add_option("-f", "--file", help="Optionally, read from a file instead of STDIN", action="store", default=None, dest="file") + parser.add_option("--html", help="HTML Format the email", action="store_true", default=False, dest="html") + parser.add_option("--no-instance-id", help="If set, don't append the instance id", action="store_false", default=True, dest="append_instance_id") + + (options, args) = parser.parse_args() + if options.file: + body = open(options.file, 'r').read() + else: + body = sys.stdin.read() + + if options.html: + notify(options.subject, html_body=body, to_string=options.to, append_instance_id=options.append_instance_id) + else: + notify(options.subject, body=body, to_string=options.to, append_instance_id=options.append_instance_id)