Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/click/_termui_impl.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/click/_termui_impl.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,657 @@ +# -*- coding: utf-8 -*- +""" +This module contains implementations for the termui module. To keep the +import time of Click down, some infrequently used functionality is +placed in this module and only imported as needed. +""" +import contextlib +import math +import os +import sys +import time + +from ._compat import _default_text_stdout +from ._compat import CYGWIN +from ._compat import get_best_encoding +from ._compat import int_types +from ._compat import isatty +from ._compat import open_stream +from ._compat import range_type +from ._compat import strip_ansi +from ._compat import term_len +from ._compat import WIN +from .exceptions import ClickException +from .utils import echo + +if os.name == "nt": + BEFORE_BAR = "\r" + AFTER_BAR = "\n" +else: + BEFORE_BAR = "\r\033[?25l" + AFTER_BAR = "\033[?25h\n" + + +def _length_hint(obj): + """Returns the length hint of an object.""" + try: + return len(obj) + except (AttributeError, TypeError): + try: + get_hint = type(obj).__length_hint__ + except AttributeError: + return None + try: + hint = get_hint(obj) + except TypeError: + return None + if hint is NotImplemented or not isinstance(hint, int_types) or hint < 0: + return None + return hint + + +class ProgressBar(object): + def __init__( + self, + iterable, + length=None, + fill_char="#", + empty_char=" ", + bar_template="%(bar)s", + info_sep=" ", + show_eta=True, + show_percent=None, + show_pos=False, + item_show_func=None, + label=None, + file=None, + color=None, + width=30, + ): + self.fill_char = fill_char + self.empty_char = empty_char + self.bar_template = bar_template + self.info_sep = info_sep + self.show_eta = show_eta + self.show_percent = show_percent + self.show_pos = show_pos + self.item_show_func = item_show_func + self.label = label or "" + if file is None: + file = _default_text_stdout() + self.file = file + self.color = color + self.width = width + self.autowidth = width == 0 + + if length is None: + length = _length_hint(iterable) + if iterable is None: + if length is None: + raise TypeError("iterable or length is required") + iterable = range_type(length) + self.iter = iter(iterable) + self.length = length + self.length_known = length is not None + self.pos = 0 + self.avg = [] + self.start = self.last_eta = time.time() + self.eta_known = False + self.finished = False + self.max_width = None + self.entered = False + self.current_item = None + self.is_hidden = not isatty(self.file) + self._last_line = None + self.short_limit = 0.5 + + def __enter__(self): + self.entered = True + self.render_progress() + return self + + def __exit__(self, exc_type, exc_value, tb): + self.render_finish() + + def __iter__(self): + if not self.entered: + raise RuntimeError("You need to use progress bars in a with block.") + self.render_progress() + return self.generator() + + def __next__(self): + # Iteration is defined in terms of a generator function, + # returned by iter(self); use that to define next(). This works + # because `self.iter` is an iterable consumed by that generator, + # so it is re-entry safe. Calling `next(self.generator())` + # twice works and does "what you want". + return next(iter(self)) + + # Python 2 compat + next = __next__ + + def is_fast(self): + return time.time() - self.start <= self.short_limit + + def render_finish(self): + if self.is_hidden or self.is_fast(): + return + self.file.write(AFTER_BAR) + self.file.flush() + + @property + def pct(self): + if self.finished: + return 1.0 + return min(self.pos / (float(self.length) or 1), 1.0) + + @property + def time_per_iteration(self): + if not self.avg: + return 0.0 + return sum(self.avg) / float(len(self.avg)) + + @property + def eta(self): + if self.length_known and not self.finished: + return self.time_per_iteration * (self.length - self.pos) + return 0.0 + + def format_eta(self): + if self.eta_known: + t = int(self.eta) + seconds = t % 60 + t //= 60 + minutes = t % 60 + t //= 60 + hours = t % 24 + t //= 24 + if t > 0: + return "{}d {:02}:{:02}:{:02}".format(t, hours, minutes, seconds) + else: + return "{:02}:{:02}:{:02}".format(hours, minutes, seconds) + return "" + + def format_pos(self): + pos = str(self.pos) + if self.length_known: + pos += "/{}".format(self.length) + return pos + + def format_pct(self): + return "{: 4}%".format(int(self.pct * 100))[1:] + + def format_bar(self): + if self.length_known: + bar_length = int(self.pct * self.width) + bar = self.fill_char * bar_length + bar += self.empty_char * (self.width - bar_length) + elif self.finished: + bar = self.fill_char * self.width + else: + bar = list(self.empty_char * (self.width or 1)) + if self.time_per_iteration != 0: + bar[ + int( + (math.cos(self.pos * self.time_per_iteration) / 2.0 + 0.5) + * self.width + ) + ] = self.fill_char + bar = "".join(bar) + return bar + + def format_progress_line(self): + show_percent = self.show_percent + + info_bits = [] + if self.length_known and show_percent is None: + show_percent = not self.show_pos + + if self.show_pos: + info_bits.append(self.format_pos()) + if show_percent: + info_bits.append(self.format_pct()) + if self.show_eta and self.eta_known and not self.finished: + info_bits.append(self.format_eta()) + if self.item_show_func is not None: + item_info = self.item_show_func(self.current_item) + if item_info is not None: + info_bits.append(item_info) + + return ( + self.bar_template + % { + "label": self.label, + "bar": self.format_bar(), + "info": self.info_sep.join(info_bits), + } + ).rstrip() + + def render_progress(self): + from .termui import get_terminal_size + + if self.is_hidden: + return + + buf = [] + # Update width in case the terminal has been resized + if self.autowidth: + old_width = self.width + self.width = 0 + clutter_length = term_len(self.format_progress_line()) + new_width = max(0, get_terminal_size()[0] - clutter_length) + if new_width < old_width: + buf.append(BEFORE_BAR) + buf.append(" " * self.max_width) + self.max_width = new_width + self.width = new_width + + clear_width = self.width + if self.max_width is not None: + clear_width = self.max_width + + buf.append(BEFORE_BAR) + line = self.format_progress_line() + line_len = term_len(line) + if self.max_width is None or self.max_width < line_len: + self.max_width = line_len + + buf.append(line) + buf.append(" " * (clear_width - line_len)) + line = "".join(buf) + # Render the line only if it changed. + + if line != self._last_line and not self.is_fast(): + self._last_line = line + echo(line, file=self.file, color=self.color, nl=False) + self.file.flush() + + def make_step(self, n_steps): + self.pos += n_steps + if self.length_known and self.pos >= self.length: + self.finished = True + + if (time.time() - self.last_eta) < 1.0: + return + + self.last_eta = time.time() + + # self.avg is a rolling list of length <= 7 of steps where steps are + # defined as time elapsed divided by the total progress through + # self.length. + if self.pos: + step = (time.time() - self.start) / self.pos + else: + step = time.time() - self.start + + self.avg = self.avg[-6:] + [step] + + self.eta_known = self.length_known + + def update(self, n_steps): + self.make_step(n_steps) + self.render_progress() + + def finish(self): + self.eta_known = 0 + self.current_item = None + self.finished = True + + def generator(self): + """Return a generator which yields the items added to the bar + during construction, and updates the progress bar *after* the + yielded block returns. + """ + # WARNING: the iterator interface for `ProgressBar` relies on + # this and only works because this is a simple generator which + # doesn't create or manage additional state. If this function + # changes, the impact should be evaluated both against + # `iter(bar)` and `next(bar)`. `next()` in particular may call + # `self.generator()` repeatedly, and this must remain safe in + # order for that interface to work. + if not self.entered: + raise RuntimeError("You need to use progress bars in a with block.") + + if self.is_hidden: + for rv in self.iter: + yield rv + else: + for rv in self.iter: + self.current_item = rv + yield rv + self.update(1) + self.finish() + self.render_progress() + + +def pager(generator, color=None): + """Decide what method to use for paging through text.""" + stdout = _default_text_stdout() + if not isatty(sys.stdin) or not isatty(stdout): + return _nullpager(stdout, generator, color) + pager_cmd = (os.environ.get("PAGER", None) or "").strip() + if pager_cmd: + if WIN: + return _tempfilepager(generator, pager_cmd, color) + return _pipepager(generator, pager_cmd, color) + if os.environ.get("TERM") in ("dumb", "emacs"): + return _nullpager(stdout, generator, color) + if WIN or sys.platform.startswith("os2"): + return _tempfilepager(generator, "more <", color) + if hasattr(os, "system") and os.system("(less) 2>/dev/null") == 0: + return _pipepager(generator, "less", color) + + import tempfile + + fd, filename = tempfile.mkstemp() + os.close(fd) + try: + if hasattr(os, "system") and os.system('more "{}"'.format(filename)) == 0: + return _pipepager(generator, "more", color) + return _nullpager(stdout, generator, color) + finally: + os.unlink(filename) + + +def _pipepager(generator, cmd, color): + """Page through text by feeding it to another program. Invoking a + pager through this might support colors. + """ + import subprocess + + env = dict(os.environ) + + # If we're piping to less we might support colors under the + # condition that + cmd_detail = cmd.rsplit("/", 1)[-1].split() + if color is None and cmd_detail[0] == "less": + less_flags = "{}{}".format(os.environ.get("LESS", ""), " ".join(cmd_detail[1:])) + if not less_flags: + env["LESS"] = "-R" + color = True + elif "r" in less_flags or "R" in less_flags: + color = True + + c = subprocess.Popen(cmd, shell=True, stdin=subprocess.PIPE, env=env) + encoding = get_best_encoding(c.stdin) + try: + for text in generator: + if not color: + text = strip_ansi(text) + + c.stdin.write(text.encode(encoding, "replace")) + except (IOError, KeyboardInterrupt): + pass + else: + c.stdin.close() + + # Less doesn't respect ^C, but catches it for its own UI purposes (aborting + # search or other commands inside less). + # + # That means when the user hits ^C, the parent process (click) terminates, + # but less is still alive, paging the output and messing up the terminal. + # + # If the user wants to make the pager exit on ^C, they should set + # `LESS='-K'`. It's not our decision to make. + while True: + try: + c.wait() + except KeyboardInterrupt: + pass + else: + break + + +def _tempfilepager(generator, cmd, color): + """Page through text by invoking a program on a temporary file.""" + import tempfile + + filename = tempfile.mktemp() + # TODO: This never terminates if the passed generator never terminates. + text = "".join(generator) + if not color: + text = strip_ansi(text) + encoding = get_best_encoding(sys.stdout) + with open_stream(filename, "wb")[0] as f: + f.write(text.encode(encoding)) + try: + os.system('{} "{}"'.format(cmd, filename)) + finally: + os.unlink(filename) + + +def _nullpager(stream, generator, color): + """Simply print unformatted text. This is the ultimate fallback.""" + for text in generator: + if not color: + text = strip_ansi(text) + stream.write(text) + + +class Editor(object): + def __init__(self, editor=None, env=None, require_save=True, extension=".txt"): + self.editor = editor + self.env = env + self.require_save = require_save + self.extension = extension + + def get_editor(self): + if self.editor is not None: + return self.editor + for key in "VISUAL", "EDITOR": + rv = os.environ.get(key) + if rv: + return rv + if WIN: + return "notepad" + for editor in "sensible-editor", "vim", "nano": + if os.system("which {} >/dev/null 2>&1".format(editor)) == 0: + return editor + return "vi" + + def edit_file(self, filename): + import subprocess + + editor = self.get_editor() + if self.env: + environ = os.environ.copy() + environ.update(self.env) + else: + environ = None + try: + c = subprocess.Popen( + '{} "{}"'.format(editor, filename), env=environ, shell=True, + ) + exit_code = c.wait() + if exit_code != 0: + raise ClickException("{}: Editing failed!".format(editor)) + except OSError as e: + raise ClickException("{}: Editing failed: {}".format(editor, e)) + + def edit(self, text): + import tempfile + + text = text or "" + if text and not text.endswith("\n"): + text += "\n" + + fd, name = tempfile.mkstemp(prefix="editor-", suffix=self.extension) + try: + if WIN: + encoding = "utf-8-sig" + text = text.replace("\n", "\r\n") + else: + encoding = "utf-8" + text = text.encode(encoding) + + f = os.fdopen(fd, "wb") + f.write(text) + f.close() + timestamp = os.path.getmtime(name) + + self.edit_file(name) + + if self.require_save and os.path.getmtime(name) == timestamp: + return None + + f = open(name, "rb") + try: + rv = f.read() + finally: + f.close() + return rv.decode("utf-8-sig").replace("\r\n", "\n") + finally: + os.unlink(name) + + +def open_url(url, wait=False, locate=False): + import subprocess + + def _unquote_file(url): + try: + import urllib + except ImportError: + import urllib + if url.startswith("file://"): + url = urllib.unquote(url[7:]) + return url + + if sys.platform == "darwin": + args = ["open"] + if wait: + args.append("-W") + if locate: + args.append("-R") + args.append(_unquote_file(url)) + null = open("/dev/null", "w") + try: + return subprocess.Popen(args, stderr=null).wait() + finally: + null.close() + elif WIN: + if locate: + url = _unquote_file(url) + args = 'explorer /select,"{}"'.format(_unquote_file(url.replace('"', ""))) + else: + args = 'start {} "" "{}"'.format( + "/WAIT" if wait else "", url.replace('"', "") + ) + return os.system(args) + elif CYGWIN: + if locate: + url = _unquote_file(url) + args = 'cygstart "{}"'.format(os.path.dirname(url).replace('"', "")) + else: + args = 'cygstart {} "{}"'.format("-w" if wait else "", url.replace('"', "")) + return os.system(args) + + try: + if locate: + url = os.path.dirname(_unquote_file(url)) or "." + else: + url = _unquote_file(url) + c = subprocess.Popen(["xdg-open", url]) + if wait: + return c.wait() + return 0 + except OSError: + if url.startswith(("http://", "https://")) and not locate and not wait: + import webbrowser + + webbrowser.open(url) + return 0 + return 1 + + +def _translate_ch_to_exc(ch): + if ch == u"\x03": + raise KeyboardInterrupt() + if ch == u"\x04" and not WIN: # Unix-like, Ctrl+D + raise EOFError() + if ch == u"\x1a" and WIN: # Windows, Ctrl+Z + raise EOFError() + + +if WIN: + import msvcrt + + @contextlib.contextmanager + def raw_terminal(): + yield + + def getchar(echo): + # The function `getch` will return a bytes object corresponding to + # the pressed character. Since Windows 10 build 1803, it will also + # return \x00 when called a second time after pressing a regular key. + # + # `getwch` does not share this probably-bugged behavior. Moreover, it + # returns a Unicode object by default, which is what we want. + # + # Either of these functions will return \x00 or \xe0 to indicate + # a special key, and you need to call the same function again to get + # the "rest" of the code. The fun part is that \u00e0 is + # "latin small letter a with grave", so if you type that on a French + # keyboard, you _also_ get a \xe0. + # E.g., consider the Up arrow. This returns \xe0 and then \x48. The + # resulting Unicode string reads as "a with grave" + "capital H". + # This is indistinguishable from when the user actually types + # "a with grave" and then "capital H". + # + # When \xe0 is returned, we assume it's part of a special-key sequence + # and call `getwch` again, but that means that when the user types + # the \u00e0 character, `getchar` doesn't return until a second + # character is typed. + # The alternative is returning immediately, but that would mess up + # cross-platform handling of arrow keys and others that start with + # \xe0. Another option is using `getch`, but then we can't reliably + # read non-ASCII characters, because return values of `getch` are + # limited to the current 8-bit codepage. + # + # Anyway, Click doesn't claim to do this Right(tm), and using `getwch` + # is doing the right thing in more situations than with `getch`. + if echo: + func = msvcrt.getwche + else: + func = msvcrt.getwch + + rv = func() + if rv in (u"\x00", u"\xe0"): + # \x00 and \xe0 are control characters that indicate special key, + # see above. + rv += func() + _translate_ch_to_exc(rv) + return rv + + +else: + import tty + import termios + + @contextlib.contextmanager + def raw_terminal(): + if not isatty(sys.stdin): + f = open("/dev/tty") + fd = f.fileno() + else: + fd = sys.stdin.fileno() + f = None + try: + old_settings = termios.tcgetattr(fd) + try: + tty.setraw(fd) + yield fd + finally: + termios.tcsetattr(fd, termios.TCSADRAIN, old_settings) + sys.stdout.flush() + if f is not None: + f.close() + except termios.error: + pass + + def getchar(echo): + with raw_terminal() as fd: + ch = os.read(fd, 32) + ch = ch.decode(get_best_encoding(sys.stdin), "replace") + if echo and isatty(sys.stdout): + sys.stdout.write(ch) + _translate_ch_to_exc(ch) + return ch