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+Metadata-Version: 2.1
+Name: ephemeris
+Version: 0.10.5
+Summary: Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
+Home-page: https://github.com/galaxyproject/ephemeris
+Author: Galaxy Project and Community
+Author-email: jmchilton@gmail.com
+License: AFL
+Keywords: galaxy
+Platform: UNKNOWN
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: Environment :: Console
+Classifier: License :: OSI Approved :: Academic Free License (AFL)
+Classifier: Operating System :: POSIX
+Classifier: Topic :: Software Development
+Classifier: Topic :: Software Development :: Code Generators
+Classifier: Topic :: Software Development :: Testing
+Classifier: Natural Language :: English
+Classifier: Programming Language :: Python :: 2
+Classifier: Programming Language :: Python :: 2.7
+Requires-Dist: six (>=1.9.0)
+Requires-Dist: PyYAML
+Requires-Dist: bioblend (>=0.10.0)
+Requires-Dist: Jinja2
+Requires-Dist: galaxy-tool-util (>=19.9.0.dev5)
+Requires-Dist: futures ; python_version < "3"
+
+
+.. image:: https://readthedocs.org/projects/pip/badge/?version=latest
+   :target: https://ephemeris.readthedocs.org
+
+.. image:: https://badge.fury.io/py/ephemeris.svg
+   :target: https://pypi.python.org/pypi/ephemeris/
+
+.. image:: https://travis-ci.org/galaxyproject/ephemeris.png?branch=master
+   :target: https://travis-ci.org/galaxyproject/ephemeris
+
+.. image:: https://api.codacy.com/project/badge/Coverage/e12102174b4e452c871cd2bafedaec60
+   :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&utm_medium=referral&utm_content=galaxyproject/ephemeris&utm_campaign=Badge_Coverage
+
+.. image:: https://api.codacy.com/project/badge/Grade/e12102174b4e452c871cd2bafedaec60
+   :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=galaxyproject/ephemeris&amp;utm_campaign=Badge_Grade
+
+Ephemeris is a small Python library and set of scripts for managing the
+bootstrapping of Galaxy_ plugins - tools, index data, and workflows.
+
+* Free software: Academic Free License version 3.0
+* Documentation: https://ephemeris.readthedocs.org.
+* Code: https://github.com/galaxyproject/ephemeris
+
+
+.. _Galaxy: http://galaxyproject.org/
+.. _GitHub: https://github.com/
+.. _Docker: https://www.docker.com/
+.. _Homebrew: http://brew.sh/
+.. _linuxbrew: https://github.com/Homebrew/linuxbrew
+.. _Vagrant: https://www.vagrantup.com/
+.. _Travis CI: http://travis-ci.org/
+
+
+
+
+History
+-------
+
+.. to_doc
+
+---------------------
+0.10.5 (2020-02-29)
+---------------------
+
+* Fix `shed-tools test -t workflow_tools.yml` (thanks to `@nsoranzo`_). `Pull
+  Request 155`_
+* Fix installing tool dependencies from yaml list (thanks to `@mvdbeek`_).
+  `Pull Request 154`_
+* Cast exceptions to string using unicodify (thanks to `@mvdbeek`_). `Pull
+  Request 150`_
+* Add description when creating folders with setup_data_libraries (thanks to
+  `@abretaud`_). `Pull Request 149`_
+
+---------------------
+0.10.4 (2019-10-05)
+---------------------
+
+* When polling for repo install status, ensure the correct revision is being
+  checked (thanks to `@natefoo`_). `Pull Request 146`_
+* Add install_tool_deps command (thanks to `@innovate-invent`_). `Pull Request
+  145`_
+
+---------------------
+0.10.3 (2019-07-18)
+---------------------
+
+* Add install-tool-deps command that will install tool dependencies
+  (thanks to `@innovate-invent`_). `Pull Request 130`_
+* Require galaxy-tool-util instead of galaxy-lib (thanks to `@nsoranzo`_).
+  `Pull Request 143`_
+* Release to PyPI on tag (thanks to `@mvdbeek`_). `Pull Request 142`_
+* Make Data library creation more robust
+  (thanks to `@erasche`_). `Pull Request 138`_
+* Make tool testing more robust (thanks to
+  `@mvdbeek`_). `Pull Request 137`_, `Pull Request 136`_
+
+---------------------
+0.10.2 (2019-06-04)
+---------------------
+
+* Fix default message check (thanks to `@mvdbeek`_). `Pull Request 135`_
+
+---------------------
+0.10.1 (2019-06-04)
+---------------------
+
+* Fix timeout handling when installing repositories
+  (thanks to `@mvdbeek`_). `Pull Request 134`_
+
+---------------------
+0.10.0 (2019-05-29)
+---------------------
+
+* fix doc building and regenerate (thanks to `@martenson`_). `Pull Request
+  129`_
+* fix default for 'parallel_tests' typo (thanks to `@martenson`_). `Pull
+  Request 127`_
+* Include some additional stats for xunit reporting (thanks to `@mvdbeek`_).
+  `Pull Request 126`_
+* Handle timeout gracefully for UWSGI connection (thanks to `@pcm32`_). `Pull
+  Request 123`_
+* Update Docs for User Name (Should be Email) (thanks to `@rdvelazquez`_).
+  `Pull Request 122`_
+* remove the python invocation from usage examples (thanks to `@martenson`_).
+  `Pull Request 121`_
+* Fix crash when too_with_panel is empty (thanks to `@jvanbraekel`_). `Pull
+  Request 120`_
+* Test tools in parallel, with regular user permissions, without a shared
+  filesystem (thanks to `@mvdbeek`_). `Pull Request 118`_
+* use latest documentation dependencies to fix documentation build issue
+  (thanks to `@rhpvorderman`_). `Pull Request 114`_
+* Refactor shed tool functionality. Removed deprecated options from 
+  shed-tools CLI. 
+  shed-tools update now also accepts tool list, so tools in galaxy can 
+  be selectively updated. Improved algorithm leads to much faster 
+  skipping of already installed tools, which makes the installation 
+  of tools much faster on an already populated galaxy.
+  (thanks to `@rhpvorderman`_).
+  `Pull Request 104`_
+* Add ``pytest``, enable coverage testing (thanks to `@rhpvorderman`_).
+  `Pull Request 105`_
+* Make ``setup_data_libraries.py`` check for existence before recreation of
+  libraries.
+  (thanks to `@Slugger70`_).
+  `Pull Request 103`_
+* Catch failures on requests to the installed repo list when doing post-
+  timeout spinning on installation in ``shed-tools`` (thanks to `@natefoo`_).
+  `Pull Request 97`_
+* Fix coverage reporting on codacy (thanks to `@rhpvorderman`_).
+  `Pull Request 106`_
+* Run-data-managers now outputs stderr of failed jobs (thanks to `@rhpvorderman`_).
+  `Pull Request 110`_
+
+---------------------
+0.9.0 (2018-05-23)
+---------------------
+
+* Update data managers when updating tools (thanks to `@rhpvorderman`_).
+  `Pull Request 78`_, `Issue 69`_
+* Run data managers aggressive parallelization and refactoring (thanks to
+  `@rhpvorderman`_).
+  `Pull Request 79`_
+* Makes publishing of imported workflows available (thanks to `@pcm32`_).
+  `Pull Request 74`_
+* Add option to test tools on update/install for Galaxy 18.05 (thanks to `@jmchilton`_).
+  `Pull Request 81`_
+* Upload 2.0 support for data library creation (thanks to `@jmchilton`_).
+  `Pull Request 89`_
+* Fixes to revision parsing in tools.yaml (thanks to `@bgruening`_).
+  `Pull Request 70`_
+* Add Codacy monitoring and badge (thanks to `@jmchilton`_).
+  `Pull Request 73`_
+* Fix typo in project organization document (thanks to `@blankenberg`_).
+  `Pull Request 86`_
+* Fix hardcoded log paths (thanks to `@rhpvorderman`_).
+  `Pull Request 85`_
+* Fix ``shed-tools`` update argparse handling (thanks to `@rhpvorderman`_).
+  `Pull Request 88`_
+* Fix a few lint issues (thanks to `@jmchilton`_).
+  `Pull Request 90`_
+
+---------------------
+0.8.0 (2017-12-29)
+---------------------
+
+* Many new documentation enhancements (thanks to @rhpvorderman, and others)
+* rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman)
+* many fixes and new tests by (thanks to @mvdbeek)
+* Parallelization of run-data-managers (thanks to @rhpvorderman)
+* run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)
+* run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)
+* ephemeris will now use https by default instead of http (thanks to @bgruening)
+
+---------------------
+0.7.0 (2017-06-27)
+---------------------
+
+* Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) -
+  docs are now published to https://readthedocs.org/projects/ephemeris/.
+* Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).
+* Enable data managers to run with API keys (thanks to @rhpvorderman).
+* Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).
+* Preserve readable order of keys while processing tool lists (thanks to @drosofff).
+
+---------------------
+0.6.1 (2017-04-17)
+---------------------
+
+* Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various
+  refactoring to reduce code duplication and Python 3 fixes. `#36
+  <https://github.com/galaxyproject/ephemeris/pull/36>`__
+
+---------------------
+0.6.0 (2017-04-10)
+---------------------
+
+* Add new connection options for setting up data libraries.
+
+---------------------
+0.5.1 (2017-04-07)
+---------------------
+
+* Fix new ``run-data-managers`` CLI entrypoint.
+
+---------------------
+0.5.0 (2017-04-06)
+---------------------
+
+* Add ``run-data-managers`` tool to trigger DM with multiple values and in order. `#30 <https://github.com/galaxyproject/ephemeris/pull/30>`_
+* The workflow install tool now supports a directory of workflows. `#27 <https://github.com/galaxyproject/ephemeris/pull/27>`_
+* enable global options in a tool yaml files, like `install_resolver_dependencies: true` `#26 <https://github.com/galaxyproject/ephemeris/pull/26>`_
+* Mention mimum required galaxy versions. `#23 <https://github.com/galaxyproject/ephemeris/pull/23>`_ (thanks to @mvdbeek)
+
+
+---------------------
+0.4.0 (2016-09-07)
+---------------------
+
+* Be more generic in determining a server time-out (thanks to @afgane).
+* Get tool list entrypoint and improvements (thanks to @mvdbeek).
+* Rename ``tool_panel_section_name`` to ``tool_panel_section_label`` like
+  ansible-galaxy-tools (thanks to @nturaga).
+* Add missing file ``tool_list.yaml.sample`` (thanks to @nturaga).
+
+---------------------
+0.3.0 (2016-08-26)
+---------------------
+
+* More robust shed-install script, install dependencies by default, improve logging
+  (thanks to @mvdbeek).
+
+---------------------
+0.2.0 (2016-08-15)
+---------------------
+
+* Add tool generate a tool list from a Galaxy workflow file
+  (thanks to @drosofff).
+* Fix various code quality issues including adding beta support
+  for Python 3 (thanks in part to @mvdbeek).
+
+---------------------
+0.1.0 (2016-06-15)
+---------------------
+
+* Setup project, pull in scripts from `ansible-galaxy-tools
+  <https://github.com/galaxyproject/ansible-galaxy-tools>`__
+  and adapt them for usage as a library.
+
+.. github_links
+.. _Pull Request 155: https://github.com/galaxyproject/ephemeris/pull/155
+.. _Pull Request 154: https://github.com/galaxyproject/ephemeris/pull/154
+.. _Pull Request 150: https://github.com/galaxyproject/ephemeris/pull/150
+.. _Pull Request 149: https://github.com/galaxyproject/ephemeris/pull/149
+.. _Pull Request 146: https://github.com/galaxyproject/ephemeris/pull/146
+.. _Pull Request 145: https://github.com/galaxyproject/ephemeris/pull/145
+.. _Pull Request 130: https://github.com/galaxyproject/ephemeris/pull/130
+.. _Pull Request 143: https://github.com/galaxyproject/ephemeris/pull/143
+.. _Pull Request 142: https://github.com/galaxyproject/ephemeris/pull/142
+.. _Pull Request 138: https://github.com/galaxyproject/ephemeris/pull/138
+.. _Pull Request 137: https://github.com/galaxyproject/ephemeris/pull/137
+.. _Pull Request 136: https://github.com/galaxyproject/ephemeris/pull/136
+.. _Pull Request 135: https://github.com/galaxyproject/ephemeris/pull/135
+.. _Pull Request 134: https://github.com/galaxyproject/ephemeris/pull/134
+.. _Pull Request 129: https://github.com/galaxyproject/ephemeris/pull/129
+.. _Pull Request 127: https://github.com/galaxyproject/ephemeris/pull/127
+.. _Pull Request 126: https://github.com/galaxyproject/ephemeris/pull/126
+.. _Pull Request 123: https://github.com/galaxyproject/ephemeris/pull/123
+.. _Pull Request 122: https://github.com/galaxyproject/ephemeris/pull/122
+.. _Pull Request 121: https://github.com/galaxyproject/ephemeris/pull/121
+.. _Pull Request 120: https://github.com/galaxyproject/ephemeris/pull/120
+.. _Pull Request 118: https://github.com/galaxyproject/ephemeris/pull/118
+.. _Pull Request 114: https://github.com/galaxyproject/ephemeris/pull/114
+.. _Pull Request 97: https://github.com/galaxyproject/ephemeris/pull/97
+.. _Pull Request 103: https://github.com/galaxyproject/ephemeris/pull/103
+.. _Pull Request 104: https://github.com/galaxyproject/ephemeris/pull/104
+.. _Pull Request 105: https://github.com/galaxyproject/ephemeris/pull/105
+.. _Pull Request 106: https://github.com/galaxyproject/ephemeris/pull/106
+.. _Pull Request 110: https://github.com/galaxyproject/ephemeris/pull/110
+.. _Pull Request 74: https://github.com/galaxyproject/ephemeris/pull/74
+.. _Issue 69: https://github.com/galaxyproject/ephemeris/issues/69
+.. _Pull Request 73: https://github.com/galaxyproject/ephemeris/pull/73
+.. _Pull Request 78: https://github.com/galaxyproject/ephemeris/pull/78
+.. _Pull Request 70: https://github.com/galaxyproject/ephemeris/pull/70
+.. _Pull Request 86: https://github.com/galaxyproject/ephemeris/pull/86
+.. _Pull Request 79: https://github.com/galaxyproject/ephemeris/pull/79
+.. _Pull Request 85: https://github.com/galaxyproject/ephemeris/pull/85
+.. _Pull Request 81: https://github.com/galaxyproject/ephemeris/pull/81
+.. _Pull Request 90: https://github.com/galaxyproject/ephemeris/pull/90
+.. _Pull Request 89: https://github.com/galaxyproject/ephemeris/pull/89
+.. _Pull Request 88: https://github.com/galaxyproject/ephemeris/pull/88
+.. _@abretaud: https://github.com/abretaud
+.. _@bgruening: https://github.com/bgruening
+.. _@blankenberg: https://github.com/blankenberg
+.. _@rhpvorderman: https://github.com/rhpvorderman
+.. _@pcm32: https://github.com/pcm32
+.. _@jmchilton: https://github.com/jmchilton
+.. _@Slugger70: https://github.com/Slugger70
+.. _@natefoo: https://github.com/natefoo
+.. _@martenson: https://github.com/martenson
+.. _@mvdbeek: https://github.com/mvdbeek
+.. _@rdvelazquez: https://github.com/rdvelazquez
+.. _@jvanbraekel: https://github.com/jvanbraekel
+.. _@innovate-invent: https://github.com/innovate-invent
+.. _@erasche: https://github.com/erasche
+.. _@nsoranzo: https://github.com/nsoranzo
+
+.. _bioblend: https://github.com/galaxyproject/bioblend/
+.. _nose: https://nose.readthedocs.org/en/latest/
+
+