Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/gxformat2-0.11.1.dist-info/METADATA @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/gxformat2-0.11.1.dist-info/METADATA Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,219 @@ +Metadata-Version: 2.1 +Name: gxformat2 +Version: 0.11.1 +Summary: Galaxy Workflow Format 2 Descriptions +Home-page: https://github.com/galaxyproject/gxformat2 +Author: Galaxy Project and Community +Author-email: jmchilton@gmail.com +License: AFL +Keywords: galaxy +Platform: UNKNOWN +Classifier: Development Status :: 5 - Production/Stable +Classifier: Intended Audience :: Developers +Classifier: Environment :: Console +Classifier: License :: OSI Approved :: Academic Free License (AFL) +Classifier: Operating System :: POSIX +Classifier: Topic :: Software Development +Classifier: Topic :: Software Development :: Code Generators +Classifier: Topic :: Software Development :: Testing +Classifier: Natural Language :: English +Classifier: Programming Language :: Python :: 2 +Classifier: Programming Language :: Python :: 2.7 +Classifier: Programming Language :: Python :: 3 +Requires-Dist: six (>=1.9.0) +Requires-Dist: bioblend +Requires-Dist: pyyaml + + +.. image:: https://readthedocs.org/projects/pip/badge/?version=latest + :target: https://gxformat2.readthedocs.org + +.. image:: https://badge.fury.io/py/gxformat2.svg + :target: https://pypi.python.org/pypi/gxformat2/ + +.. image:: https://travis-ci.org/jmchilton/gxformat2.png?branch=master + :target: https://travis-ci.org/jmchilton/gxformat2 + +.. image:: https://coveralls.io/repos/jmchilton/gxformat2/badge.svg?branch=master + :target: https://coveralls.io/r/jmchilton/gxformat2?branch=master + + +This package defines a high-level Galaxy_ workflow description termed "Format +2". At this point, these workflows are defined entirely client side and +transcoded into traditional (or Format 1?) Galaxy workflows. + +The traditional Galaxy workflow description is not meant to be concise and is +neither readily human readable or human writable. Format 2 addresses all three +of these limitations. + +Format 2 workflow is a highly experimental format and will change rapidly in +potentially backward incompatible ways until the code is merged into the +Galaxy server and enabled by default. + +* Free software: Academic Free License version 3.0 +* Documentation: https://galaxy-lib.readthedocs.org. +* Code: https://github.com/galaxyproject/galaxy-lib + + +.. _Galaxy: http://galaxyproject.org/ +.. _GitHub: https://github.com/ +.. _Travis CI: http://travis-ci.org/ + + + + +History +------- + +.. to_doc + +--------------------- +0.11.1 (2020-02-25) +--------------------- + +* Bug fix for gxwf-lint invocation from setup.py installed script. + +--------------------- +0.11.0 (2020-02-25) +--------------------- + +* Validate Galaxy Markdown in workflow reports as part of linting. +* Improved null handling in native ga workflow linting. +* Enhancements to workflow linting from Python. Lint for lack of documentation, + tools using the test toolshed, and implement special linting for training + material workflows to ensure a tag matches the workflow topic. +* Add gxwf-viz script that produces a cytoscape visualization of a workflow. + +--------------------- +0.10.1 (2019-12-07) +--------------------- + +* Bug fix to handle outputs without labels in Format 2 - they + don't validate per se but they are important for testing in the + Galaxy framework. + +--------------------- +0.10.0 (2019-12-06) +--------------------- + +* Implement scheam, validation, linting (for Format 2 and .ga). +* Handle new reports field in Galaxy 19.09 workflows. +* Numerous fixes for conversiion to and from native workflows. +* Numerous new test cases. +* Implement Java project for valiating and linting both kinds of workflows. + +--------------------- +0.9.0 (2019-07-08) +--------------------- + +* Implement default values in gxformat2. + +--------------------- +0.8.4 (2019-06-24) +--------------------- + +* Fix output IDs of 0. + +--------------------- +0.8.3 (2019-05-23) +--------------------- + +* Implement set_columns PJA. + +--------------------- +0.8.2 (2019-03-16) +--------------------- + +* Allow another API return option for experimental tool creation API. + +--------------------- +0.8.1 (2019-03-11) +--------------------- + +* Implement change datatype PJA. + +--------------------- +0.8.0 (2018-11-01) +--------------------- + +* Implement experimental CWL-style step defaults (see Galaxy PR #6850). + +--------------------- +0.7.1 (2018-10-09) +--------------------- + +* Various small fixes for changes in 0.7.1. + +--------------------- +0.7.0 (2018-10-08) +--------------------- + +* Add some basic test cases. +* Allow ID-map style listing of steps. +* Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works. +* Allow CWL-style $graph defs that can define multiple workflows in a single file. +* Initial work on de-duplicating subworkflow definitions on import. +* Fix position handling while exporting workflow. + +--------------------- +0.6.1 (2018-10-01) +--------------------- + +* Fix export of non-data parameters and implicit workflow connections. + +--------------------- +0.6.0 (2018-10-01) +--------------------- + +* Various fixes, allow id map style workflow input definitions. + +--------------------- +0.5.0 (2018-10-01) +--------------------- + +* More fixes for PJA, add the ``doc`` keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations. + +--------------------- +0.4.0 (2018-10-01) +--------------------- + +* Fixes for exporting PJA when exporting workflows from native .ga to format 2. + +--------------------- +0.3.2 (2018-10-01) +--------------------- + +* Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0. + +--------------------- +0.3.1 (2018-10-01) +--------------------- + +* Fixes for exporting subworkflows from native .ga to format 2. + +--------------------- +0.3.0 (2018-09-30) +--------------------- + +* More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks. + +--------------------- +0.2.0 (2018-02-21) +--------------------- + +* Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented. + +--------------------- +0.1.1 (2016-08-15) +--------------------- + +* Fix one Python 3 incompatibility. + +--------------------- +0.1.0 (2016-05-02) +--------------------- + +* Initial version - code from Galaxy's test framework with changes + based on planemo testing. + +