Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/lxml/includes/xmlparser.pxd @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
---|---|
date | Sat, 02 May 2020 07:14:21 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/lxml/includes/xmlparser.pxd Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,249 @@ +from libc.string cimport const_char + +from lxml.includes.tree cimport ( + xmlDoc, xmlNode, xmlDict, xmlDtd, xmlChar, const_xmlChar) +from lxml.includes.tree cimport xmlInputReadCallback, xmlInputCloseCallback +from lxml.includes.xmlerror cimport xmlError, xmlStructuredErrorFunc + + +cdef extern from "libxml/parser.h": + ctypedef void (*startElementNsSAX2Func)(void* ctx, + const_xmlChar* localname, + const_xmlChar* prefix, + const_xmlChar* URI, + int nb_namespaces, + const_xmlChar** namespaces, + int nb_attributes, + int nb_defaulted, + const_xmlChar** attributes) + + ctypedef void (*endElementNsSAX2Func)(void* ctx, + const_xmlChar* localname, + const_xmlChar* prefix, + const_xmlChar* URI) + + ctypedef void (*startElementSAXFunc)(void* ctx, const_xmlChar* name, const_xmlChar** atts) + + ctypedef void (*endElementSAXFunc)(void* ctx, const_xmlChar* name) + + ctypedef void (*charactersSAXFunc)(void* ctx, const_xmlChar* ch, int len) + + ctypedef void (*cdataBlockSAXFunc)(void* ctx, const_xmlChar* value, int len) + + ctypedef void (*commentSAXFunc)(void* ctx, const_xmlChar* value) + + ctypedef void (*processingInstructionSAXFunc)(void* ctx, + const_xmlChar* target, + const_xmlChar* data) + + ctypedef void (*internalSubsetSAXFunc)(void* ctx, + const_xmlChar* name, + const_xmlChar* externalID, + const_xmlChar* systemID) + + ctypedef void (*endDocumentSAXFunc)(void* ctx) + + ctypedef void (*startDocumentSAXFunc)(void* ctx) + + ctypedef void (*referenceSAXFunc)(void * ctx, const_xmlChar* name) + + cdef int XML_SAX2_MAGIC + +cdef extern from "libxml/tree.h": + ctypedef struct xmlParserInput: + int line + int length + const_xmlChar* base + const_xmlChar* cur + const_xmlChar* end + const_char *filename + + ctypedef struct xmlParserInputBuffer: + void* context + xmlInputReadCallback readcallback + xmlInputCloseCallback closecallback + + ctypedef struct xmlSAXHandlerV1: + # same as xmlSAXHandler, but without namespaces + pass + + ctypedef struct xmlSAXHandler: + internalSubsetSAXFunc internalSubset + startElementNsSAX2Func startElementNs + endElementNsSAX2Func endElementNs + startElementSAXFunc startElement + endElementSAXFunc endElement + charactersSAXFunc characters + cdataBlockSAXFunc cdataBlock + referenceSAXFunc reference + commentSAXFunc comment + processingInstructionSAXFunc processingInstruction + startDocumentSAXFunc startDocument + endDocumentSAXFunc endDocument + int initialized + xmlStructuredErrorFunc serror + void* _private + + +cdef extern from "libxml/SAX2.h" nogil: + cdef void xmlSAX2StartDocument(void* ctxt) + + +cdef extern from "libxml/xmlIO.h" nogil: + cdef xmlParserInputBuffer* xmlAllocParserInputBuffer(int enc) + + +cdef extern from "libxml/parser.h": + + cdef xmlDict* xmlDictCreate() nogil + cdef xmlDict* xmlDictCreateSub(xmlDict* subdict) nogil + cdef void xmlDictFree(xmlDict* sub) nogil + cdef int xmlDictReference(xmlDict* dict) nogil + + cdef int XML_COMPLETE_ATTRS # SAX option for adding DTD default attributes + cdef int XML_SKIP_IDS # SAX option for not building an XML ID dict + + ctypedef enum xmlParserInputState: + XML_PARSER_EOF = -1 # nothing is to be parsed + XML_PARSER_START = 0 # nothing has been parsed + XML_PARSER_MISC = 1 # Misc* before int subset + XML_PARSER_PI = 2 # Within a processing instruction + XML_PARSER_DTD = 3 # within some DTD content + XML_PARSER_PROLOG = 4 # Misc* after internal subset + XML_PARSER_COMMENT = 5 # within a comment + XML_PARSER_START_TAG = 6 # within a start tag + XML_PARSER_CONTENT = 7 # within the content + XML_PARSER_CDATA_SECTION = 8 # within a CDATA section + XML_PARSER_END_TAG = 9 # within a closing tag + XML_PARSER_ENTITY_DECL = 10 # within an entity declaration + XML_PARSER_ENTITY_VALUE = 11 # within an entity value in a decl + XML_PARSER_ATTRIBUTE_VALUE = 12 # within an attribute value + XML_PARSER_SYSTEM_LITERAL = 13 # within a SYSTEM value + XML_PARSER_EPILOG = 14 # the Misc* after the last end tag + XML_PARSER_IGNORE = 15 # within an IGNORED section + XML_PARSER_PUBLIC_LITERAL = 16 # within a PUBLIC value + + + ctypedef struct xmlParserCtxt: + xmlDoc* myDoc + xmlDict* dict + int dictNames + void* _private + bint wellFormed + bint recovery + int options + bint disableSAX + int errNo + xmlParserInputState instate + bint replaceEntities + int loadsubset # != 0 if enabled, int value == why + bint validate + xmlError lastError + xmlNode* node + xmlSAXHandler* sax + void* userData + int* spaceTab + int spaceMax + bint html + bint progressive + int inSubset + int charset + xmlParserInput* input + + ctypedef enum xmlParserOption: + XML_PARSE_RECOVER = 1 # recover on errors + XML_PARSE_NOENT = 2 # substitute entities + XML_PARSE_DTDLOAD = 4 # load the external subset + XML_PARSE_DTDATTR = 8 # default DTD attributes + XML_PARSE_DTDVALID = 16 # validate with the DTD + XML_PARSE_NOERROR = 32 # suppress error reports + XML_PARSE_NOWARNING = 64 # suppress warning reports + XML_PARSE_PEDANTIC = 128 # pedantic error reporting + XML_PARSE_NOBLANKS = 256 # remove blank nodes + XML_PARSE_SAX1 = 512 # use the SAX1 interface internally + XML_PARSE_XINCLUDE = 1024 # Implement XInclude substitution + XML_PARSE_NONET = 2048 # Forbid network access + XML_PARSE_NODICT = 4096 # Do not reuse the context dictionary + XML_PARSE_NSCLEAN = 8192 # remove redundant namespaces declarations + XML_PARSE_NOCDATA = 16384 # merge CDATA as text nodes + XML_PARSE_NOXINCNODE = 32768 # do not generate XINCLUDE START/END nodes + # libxml2 2.6.21+ only: + XML_PARSE_COMPACT = 65536 # compact small text nodes + # libxml2 2.7.0+ only: + XML_PARSE_OLD10 = 131072 # parse using XML-1.0 before update 5 + XML_PARSE_NOBASEFIX = 262144 # do not fixup XINCLUDE xml:base uris + XML_PARSE_HUGE = 524288 # relax any hardcoded limit from the parser + # libxml2 2.7.3+ only: + XML_PARSE_OLDSAX = 1048576 # parse using SAX2 interface before 2.7.0 + # libxml2 2.8.0+ only: + XML_PARSE_IGNORE_ENC = 2097152 # ignore internal document encoding hint + # libxml2 2.9.0+ only: + XML_PARSE_BIG_LINES = 4194304 # Store big lines numbers in text PSVI field + + cdef void xmlInitParser() nogil + cdef void xmlCleanupParser() nogil + + cdef int xmlLineNumbersDefault(int onoff) nogil + cdef xmlParserCtxt* xmlNewParserCtxt() nogil + cdef xmlParserInput* xmlNewIOInputStream(xmlParserCtxt* ctxt, + xmlParserInputBuffer* input, + int enc) nogil + cdef int xmlCtxtUseOptions(xmlParserCtxt* ctxt, int options) nogil + cdef void xmlFreeParserCtxt(xmlParserCtxt* ctxt) nogil + cdef void xmlCtxtReset(xmlParserCtxt* ctxt) nogil + cdef void xmlClearParserCtxt(xmlParserCtxt* ctxt) nogil + cdef int xmlParseChunk(xmlParserCtxt* ctxt, + char* chunk, int size, int terminate) nogil + cdef xmlDoc* xmlCtxtReadDoc(xmlParserCtxt* ctxt, + char* cur, char* URL, char* encoding, + int options) nogil + cdef xmlDoc* xmlCtxtReadFile(xmlParserCtxt* ctxt, + char* filename, char* encoding, + int options) nogil + cdef xmlDoc* xmlCtxtReadIO(xmlParserCtxt* ctxt, + xmlInputReadCallback ioread, + xmlInputCloseCallback ioclose, + void* ioctx, + char* URL, char* encoding, + int options) nogil + cdef xmlDoc* xmlCtxtReadMemory(xmlParserCtxt* ctxt, + char* buffer, int size, + char* filename, const_char* encoding, + int options) nogil + +# iterparse: + + cdef xmlParserCtxt* xmlCreatePushParserCtxt(xmlSAXHandler* sax, + void* user_data, + char* chunk, + int size, + char* filename) nogil + + cdef int xmlCtxtResetPush(xmlParserCtxt* ctxt, + char* chunk, + int size, + char* filename, + char* encoding) nogil + +# entity loaders: + + ctypedef xmlParserInput* (*xmlExternalEntityLoader)( + const_char * URL, const_char * ID, xmlParserCtxt* context) nogil + cdef xmlExternalEntityLoader xmlGetExternalEntityLoader() nogil + cdef void xmlSetExternalEntityLoader(xmlExternalEntityLoader f) nogil + +# DTDs: + + cdef xmlDtd* xmlParseDTD(const_xmlChar* ExternalID, const_xmlChar* SystemID) nogil + cdef xmlDtd* xmlIOParseDTD(xmlSAXHandler* sax, + xmlParserInputBuffer* input, + int enc) nogil + +cdef extern from "libxml/parserInternals.h": + cdef xmlParserInput* xmlNewInputStream(xmlParserCtxt* ctxt) + cdef xmlParserInput* xmlNewStringInputStream(xmlParserCtxt* ctxt, + char* buffer) nogil + cdef xmlParserInput* xmlNewInputFromFile(xmlParserCtxt* ctxt, + char* filename) nogil + cdef void xmlFreeInputStream(xmlParserInput* input) nogil + cdef int xmlSwitchEncoding(xmlParserCtxt* ctxt, int enc) nogil