Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/yaml/__init__.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/yaml/__init__.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,427 @@ + +from .error import * + +from .tokens import * +from .events import * +from .nodes import * + +from .loader import * +from .dumper import * + +__version__ = '5.3.1' +try: + from .cyaml import * + __with_libyaml__ = True +except ImportError: + __with_libyaml__ = False + +import io + +#------------------------------------------------------------------------------ +# Warnings control +#------------------------------------------------------------------------------ + +# 'Global' warnings state: +_warnings_enabled = { + 'YAMLLoadWarning': True, +} + +# Get or set global warnings' state +def warnings(settings=None): + if settings is None: + return _warnings_enabled + + if type(settings) is dict: + for key in settings: + if key in _warnings_enabled: + _warnings_enabled[key] = settings[key] + +# Warn when load() is called without Loader=... +class YAMLLoadWarning(RuntimeWarning): + pass + +def load_warning(method): + if _warnings_enabled['YAMLLoadWarning'] is False: + return + + import warnings + + message = ( + "calling yaml.%s() without Loader=... is deprecated, as the " + "default Loader is unsafe. Please read " + "https://msg.pyyaml.org/load for full details." + ) % method + + warnings.warn(message, YAMLLoadWarning, stacklevel=3) + +#------------------------------------------------------------------------------ +def scan(stream, Loader=Loader): + """ + Scan a YAML stream and produce scanning tokens. + """ + loader = Loader(stream) + try: + while loader.check_token(): + yield loader.get_token() + finally: + loader.dispose() + +def parse(stream, Loader=Loader): + """ + Parse a YAML stream and produce parsing events. + """ + loader = Loader(stream) + try: + while loader.check_event(): + yield loader.get_event() + finally: + loader.dispose() + +def compose(stream, Loader=Loader): + """ + Parse the first YAML document in a stream + and produce the corresponding representation tree. + """ + loader = Loader(stream) + try: + return loader.get_single_node() + finally: + loader.dispose() + +def compose_all(stream, Loader=Loader): + """ + Parse all YAML documents in a stream + and produce corresponding representation trees. + """ + loader = Loader(stream) + try: + while loader.check_node(): + yield loader.get_node() + finally: + loader.dispose() + +def load(stream, Loader=None): + """ + Parse the first YAML document in a stream + and produce the corresponding Python object. + """ + if Loader is None: + load_warning('load') + Loader = FullLoader + + loader = Loader(stream) + try: + return loader.get_single_data() + finally: + loader.dispose() + +def load_all(stream, Loader=None): + """ + Parse all YAML documents in a stream + and produce corresponding Python objects. + """ + if Loader is None: + load_warning('load_all') + Loader = FullLoader + + loader = Loader(stream) + try: + while loader.check_data(): + yield loader.get_data() + finally: + loader.dispose() + +def full_load(stream): + """ + Parse the first YAML document in a stream + and produce the corresponding Python object. + + Resolve all tags except those known to be + unsafe on untrusted input. + """ + return load(stream, FullLoader) + +def full_load_all(stream): + """ + Parse all YAML documents in a stream + and produce corresponding Python objects. + + Resolve all tags except those known to be + unsafe on untrusted input. + """ + return load_all(stream, FullLoader) + +def safe_load(stream): + """ + Parse the first YAML document in a stream + and produce the corresponding Python object. + + Resolve only basic YAML tags. This is known + to be safe for untrusted input. + """ + return load(stream, SafeLoader) + +def safe_load_all(stream): + """ + Parse all YAML documents in a stream + and produce corresponding Python objects. + + Resolve only basic YAML tags. This is known + to be safe for untrusted input. + """ + return load_all(stream, SafeLoader) + +def unsafe_load(stream): + """ + Parse the first YAML document in a stream + and produce the corresponding Python object. + + Resolve all tags, even those known to be + unsafe on untrusted input. + """ + return load(stream, UnsafeLoader) + +def unsafe_load_all(stream): + """ + Parse all YAML documents in a stream + and produce corresponding Python objects. + + Resolve all tags, even those known to be + unsafe on untrusted input. + """ + return load_all(stream, UnsafeLoader) + +def emit(events, stream=None, Dumper=Dumper, + canonical=None, indent=None, width=None, + allow_unicode=None, line_break=None): + """ + Emit YAML parsing events into a stream. + If stream is None, return the produced string instead. + """ + getvalue = None + if stream is None: + stream = io.StringIO() + getvalue = stream.getvalue + dumper = Dumper(stream, canonical=canonical, indent=indent, width=width, + allow_unicode=allow_unicode, line_break=line_break) + try: + for event in events: + dumper.emit(event) + finally: + dumper.dispose() + if getvalue: + return getvalue() + +def serialize_all(nodes, stream=None, Dumper=Dumper, + canonical=None, indent=None, width=None, + allow_unicode=None, line_break=None, + encoding=None, explicit_start=None, explicit_end=None, + version=None, tags=None): + """ + Serialize a sequence of representation trees into a YAML stream. + If stream is None, return the produced string instead. + """ + getvalue = None + if stream is None: + if encoding is None: + stream = io.StringIO() + else: + stream = io.BytesIO() + getvalue = stream.getvalue + dumper = Dumper(stream, canonical=canonical, indent=indent, width=width, + allow_unicode=allow_unicode, line_break=line_break, + encoding=encoding, version=version, tags=tags, + explicit_start=explicit_start, explicit_end=explicit_end) + try: + dumper.open() + for node in nodes: + dumper.serialize(node) + dumper.close() + finally: + dumper.dispose() + if getvalue: + return getvalue() + +def serialize(node, stream=None, Dumper=Dumper, **kwds): + """ + Serialize a representation tree into a YAML stream. + If stream is None, return the produced string instead. + """ + return serialize_all([node], stream, Dumper=Dumper, **kwds) + +def dump_all(documents, stream=None, Dumper=Dumper, + default_style=None, default_flow_style=False, + canonical=None, indent=None, width=None, + allow_unicode=None, line_break=None, + encoding=None, explicit_start=None, explicit_end=None, + version=None, tags=None, sort_keys=True): + """ + Serialize a sequence of Python objects into a YAML stream. + If stream is None, return the produced string instead. + """ + getvalue = None + if stream is None: + if encoding is None: + stream = io.StringIO() + else: + stream = io.BytesIO() + getvalue = stream.getvalue + dumper = Dumper(stream, default_style=default_style, + default_flow_style=default_flow_style, + canonical=canonical, indent=indent, width=width, + allow_unicode=allow_unicode, line_break=line_break, + encoding=encoding, version=version, tags=tags, + explicit_start=explicit_start, explicit_end=explicit_end, sort_keys=sort_keys) + try: + dumper.open() + for data in documents: + dumper.represent(data) + dumper.close() + finally: + dumper.dispose() + if getvalue: + return getvalue() + +def dump(data, stream=None, Dumper=Dumper, **kwds): + """ + Serialize a Python object into a YAML stream. + If stream is None, return the produced string instead. + """ + return dump_all([data], stream, Dumper=Dumper, **kwds) + +def safe_dump_all(documents, stream=None, **kwds): + """ + Serialize a sequence of Python objects into a YAML stream. + Produce only basic YAML tags. + If stream is None, return the produced string instead. + """ + return dump_all(documents, stream, Dumper=SafeDumper, **kwds) + +def safe_dump(data, stream=None, **kwds): + """ + Serialize a Python object into a YAML stream. + Produce only basic YAML tags. + If stream is None, return the produced string instead. + """ + return dump_all([data], stream, Dumper=SafeDumper, **kwds) + +def add_implicit_resolver(tag, regexp, first=None, + Loader=None, Dumper=Dumper): + """ + Add an implicit scalar detector. + If an implicit scalar value matches the given regexp, + the corresponding tag is assigned to the scalar. + first is a sequence of possible initial characters or None. + """ + if Loader is None: + loader.Loader.add_implicit_resolver(tag, regexp, first) + loader.FullLoader.add_implicit_resolver(tag, regexp, first) + loader.UnsafeLoader.add_implicit_resolver(tag, regexp, first) + else: + Loader.add_implicit_resolver(tag, regexp, first) + Dumper.add_implicit_resolver(tag, regexp, first) + +def add_path_resolver(tag, path, kind=None, Loader=None, Dumper=Dumper): + """ + Add a path based resolver for the given tag. + A path is a list of keys that forms a path + to a node in the representation tree. + Keys can be string values, integers, or None. + """ + if Loader is None: + loader.Loader.add_path_resolver(tag, path, kind) + loader.FullLoader.add_path_resolver(tag, path, kind) + loader.UnsafeLoader.add_path_resolver(tag, path, kind) + else: + Loader.add_path_resolver(tag, path, kind) + Dumper.add_path_resolver(tag, path, kind) + +def add_constructor(tag, constructor, Loader=None): + """ + Add a constructor for the given tag. + Constructor is a function that accepts a Loader instance + and a node object and produces the corresponding Python object. + """ + if Loader is None: + loader.Loader.add_constructor(tag, constructor) + loader.FullLoader.add_constructor(tag, constructor) + loader.UnsafeLoader.add_constructor(tag, constructor) + else: + Loader.add_constructor(tag, constructor) + +def add_multi_constructor(tag_prefix, multi_constructor, Loader=None): + """ + Add a multi-constructor for the given tag prefix. + Multi-constructor is called for a node if its tag starts with tag_prefix. + Multi-constructor accepts a Loader instance, a tag suffix, + and a node object and produces the corresponding Python object. + """ + if Loader is None: + loader.Loader.add_multi_constructor(tag_prefix, multi_constructor) + loader.FullLoader.add_multi_constructor(tag_prefix, multi_constructor) + loader.UnsafeLoader.add_multi_constructor(tag_prefix, multi_constructor) + else: + Loader.add_multi_constructor(tag_prefix, multi_constructor) + +def add_representer(data_type, representer, Dumper=Dumper): + """ + Add a representer for the given type. + Representer is a function accepting a Dumper instance + and an instance of the given data type + and producing the corresponding representation node. + """ + Dumper.add_representer(data_type, representer) + +def add_multi_representer(data_type, multi_representer, Dumper=Dumper): + """ + Add a representer for the given type. + Multi-representer is a function accepting a Dumper instance + and an instance of the given data type or subtype + and producing the corresponding representation node. + """ + Dumper.add_multi_representer(data_type, multi_representer) + +class YAMLObjectMetaclass(type): + """ + The metaclass for YAMLObject. + """ + def __init__(cls, name, bases, kwds): + super(YAMLObjectMetaclass, cls).__init__(name, bases, kwds) + if 'yaml_tag' in kwds and kwds['yaml_tag'] is not None: + if isinstance(cls.yaml_loader, list): + for loader in cls.yaml_loader: + loader.add_constructor(cls.yaml_tag, cls.from_yaml) + else: + cls.yaml_loader.add_constructor(cls.yaml_tag, cls.from_yaml) + + cls.yaml_dumper.add_representer(cls, cls.to_yaml) + +class YAMLObject(metaclass=YAMLObjectMetaclass): + """ + An object that can dump itself to a YAML stream + and load itself from a YAML stream. + """ + + __slots__ = () # no direct instantiation, so allow immutable subclasses + + yaml_loader = [Loader, FullLoader, UnsafeLoader] + yaml_dumper = Dumper + + yaml_tag = None + yaml_flow_style = None + + @classmethod + def from_yaml(cls, loader, node): + """ + Convert a representation node to a Python object. + """ + return loader.construct_yaml_object(node, cls) + + @classmethod + def to_yaml(cls, dumper, data): + """ + Convert a Python object to a representation node. + """ + return dumper.represent_yaml_object(cls.yaml_tag, data, cls, + flow_style=cls.yaml_flow_style) +