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diff env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/env/lib/python3.7/site-packages/cwltool/tests/seqtk_seq.cwl	Thu May 14 14:56:58 2020 -0400
@@ -0,0 +1,25 @@
+#!/usr/bin/env cwl-runner
+cwlVersion: v1.0
+class: CommandLineTool
+id: "seqtk_seq"
+doc: "Convert to FASTA (seqtk)"
+inputs:
+  - id: input1
+    type: File
+    inputBinding:
+      position: 1
+      prefix: "-a"
+outputs:
+  - id: output1
+    type: File
+    outputBinding:
+      glob: out
+baseCommand: ["seqtk", "seq"]
+arguments: []
+stdout: out
+hints:
+  SoftwareRequirement:
+    packages:
+    - package: seqtk
+      version:
+      - r93