Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/wf/nested.cwl @ 2:6af9afd405e9 draft
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author | shellac |
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date | Thu, 14 May 2020 14:56:58 -0400 |
parents | 26e78fe6e8c4 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/cwltool/tests/wf/nested.cwl Thu May 14 14:56:58 2020 -0400 @@ -0,0 +1,55 @@ +#!/usr/bin/env cwl-runner + +cwlVersion: v1.0 +class: Workflow +label: "Nested workflow example" + +inputs: [] + +outputs: + classout: + type: File + outputSource: compile/classout + +requirements: + - class: SubworkflowFeatureRequirement + +steps: + compile: + run: 1st-workflow.cwl + in: + inp: + source: create-tar/tar + ex: + default: "Hello.java" + out: [classout] + + create-tar: + requirements: + - class: InitialWorkDirRequirement + listing: + - entryname: Hello.java + entry: | + public class Hello { + public static void main(String[] argv) { + System.out.println("Hello from Java"); + } + } + in: [] + out: [tar] + run: + class: CommandLineTool + requirements: + - class: ShellCommandRequirement + arguments: + - shellQuote: false + valueFrom: | + date + tar cf hello.tar Hello.java + date + inputs: [] + outputs: + tar: + type: File + outputBinding: + glob: "hello.tar"