--- a/env/bin/glacier	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,161 +0,0 @@
-#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
-# -*- coding: utf-8 -*-
-# Copyright (c) 2012 Miguel Olivares http://moliware.com/
-#
-# Permission is hereby granted, free of charge, to any person obtaining a
-# copy of this software and associated documentation files (the
-# "Software"), to deal in the Software without restriction, including
-# without limitation the rights to use, copy, modify, merge, publish, dis-
-# tribute, sublicense, and/or sell copies of the Software, and to permit
-# persons to whom the Software is furnished to do so, subject to the fol-
-# lowing conditions:
-#
-# The above copyright notice and this permission notice shall be included
-# in all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
-# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
-# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
-# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
-# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
-# IN THE SOFTWARE.
-#
-"""
-  glacier
-  ~~~~~~~
-
-    Amazon Glacier tool built on top of boto. Look at the usage method to see
-    how to use it.
-
-    Author: Miguel Olivares <miguel@moliware.com>
-"""
-import sys
-
-from boto.glacier import connect_to_region
-from getopt import getopt, GetoptError
-from os.path import isfile, basename
-
-
-COMMANDS = ('vaults', 'jobs', 'upload')
-
-
-def usage():
-    print("""
-glacier <command> [args]
-
-    Commands
-        vaults    - Operations with vaults
-        jobs      - Operations with jobs
-        upload    - Upload files to a vault. If the vault doesn't exits, it is
-                    created
-
-    Common args:
-        --access_key - Your AWS Access Key ID.  If not supplied, boto will
-                       use the value of the environment variable
-                       AWS_ACCESS_KEY_ID
-        --secret_key - Your AWS Secret Access Key.  If not supplied, boto
-                       will use the value of the environment variable
-                       AWS_SECRET_ACCESS_KEY
-        --region     - AWS region to use. Possible values: us-east-1, us-west-1,
-                       us-west-2, ap-northeast-1, eu-west-1.
-                       Default: us-east-1
-
-    Vaults operations:
-
-        List vaults:
-            glacier vaults 
-
-    Jobs operations:
-
-        List jobs:
-            glacier jobs <vault name>
-
-    Uploading files:
-
-        glacier upload <vault name> <files>
-
-        Examples : 
-            glacier upload pics *.jpg
-            glacier upload pics a.jpg b.jpg
-""")
-    sys.exit()
-
-
-def connect(region, debug_level=0, access_key=None, secret_key=None):
-    """ Connect to a specific region """
-    layer2 = connect_to_region(region,
-                               aws_access_key_id=access_key,
-                               aws_secret_access_key=secret_key,
-                               debug=debug_level)
-    if layer2 is None:
-        print('Invalid region (%s)' % region)
-        sys.exit(1)
-    return layer2
-
-
-def list_vaults(region, access_key=None, secret_key=None):
-    layer2 = connect(region, access_key = access_key, secret_key = secret_key)
-    for vault in layer2.list_vaults():
-        print(vault.arn)
-
-
-def list_jobs(vault_name, region, access_key=None, secret_key=None):
-    layer2 = connect(region, access_key = access_key, secret_key = secret_key)
-    print(layer2.layer1.list_jobs(vault_name))
-
-
-def upload_files(vault_name, filenames, region, access_key=None, secret_key=None):
-    layer2 = connect(region, access_key = access_key, secret_key = secret_key)
-    layer2.create_vault(vault_name)
-    glacier_vault = layer2.get_vault(vault_name)
-    for filename in filenames:
-        if isfile(filename):
-            sys.stdout.write('Uploading %s to %s...' % (filename, vault_name))
-            sys.stdout.flush()
-            archive_id = glacier_vault.upload_archive(
-                filename,
-                description = basename(filename))
-            print(' done. Vault returned ArchiveID %s' % archive_id)
-
-def main():
-    if len(sys.argv) < 2:
-        usage()
-    
-    command = sys.argv[1]
-    if command not in COMMANDS:
-        usage()
-
-    argv = sys.argv[2:]
-    options = 'a:s:r:'
-    long_options = ['access_key=', 'secret_key=', 'region=']
-    try:
-        opts, args = getopt(argv, options, long_options)
-    except GetoptError as e:
-        usage()
-
-    # Parse agument
-    access_key = secret_key = None
-    region = 'us-east-1'
-    for option, value in opts:
-        if option in ('-a', '--access_key'):
-            access_key = value
-        elif option in ('-s', '--secret_key'):
-            secret_key = value
-        elif option in ('-r', '--region'):
-            region = value
-    # handle each command
-    if command == 'vaults':
-        list_vaults(region, access_key, secret_key)
-    elif command == 'jobs':
-        if len(args) != 1:
-            usage()
-        list_jobs(args[0], region, access_key, secret_key)
-    elif command == 'upload':
-        if len(args) < 2:
-            usage()
-        upload_files(args[0], args[1:], region, access_key, secret_key)
-
-
-if __name__ == '__main__':
-    main()