diff env/bin/taskadmin @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
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--- a/env/bin/taskadmin	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,116 +0,0 @@
-#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3
-# Copyright (c) 2009 Chris Moyer http://coredumped.org/
-#
-# Permission is hereby granted, free of charge, to any person obtaining a
-# copy of this software and associated documentation files (the
-# "Software"), to deal in the Software without restriction, including
-# without limitation the rights to use, copy, modify, merge, publish, dis-
-# tribute, sublicense, and/or sell copies of the Software, and to permit
-# persons to whom the Software is furnished to do so, subject to the fol-
-# lowing conditions:
-#
-# The above copyright notice and this permission notice shall be included
-# in all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
-# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
-# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
-# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, 
-# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
-
-#
-# Task/Job Administration utility
-#
-VERSION="0.1"
-__version__ = VERSION
-usage = """%prog [options] [command]
-Commands:
-    list|ls                                List all Tasks in SDB
-    delete      <id>                       Delete Task with id <id>
-    get         <name>                     Get Task <name>
-    create|mk   <name> <hour> <command>    Create a new Task <name> with command <command> running every <hour>
-"""
-
-def list():
-    """List all Tasks in SDB"""
-    from boto.manage.task import Task
-    print "%-8s %-40s %s" %  ("Hour", "Name", "Command")
-    print "-"*100
-    for t in Task.all():
-        print "%-8s %-40s %s" % (t.hour, t.name, t.command)
-
-def get(name):
-    """Get a task
-    :param name: The name of the task to fetch
-    :type name: str
-    """
-    from boto.manage.task import Task
-    q = Task.find()
-    q.filter("name like", "%s%%" % name)
-    for t in q:
-        print "="*80
-        print "|               ", t.id
-        print "|%s" %  ("-"*79)
-        print "| Name:         ", t.name
-        print "| Hour:         ", t.hour
-        print "| Command:      ", t.command
-        if t.last_executed:
-            print "| Last Run:     ", t.last_executed.ctime()
-            print "| Last Status:  ", t.last_status
-            print "| Last Run Log: ", t.last_output
-        print "="*80
-
-def delete(id):
-    from boto.manage.task import Task
-    t = Task.get_by_id(id)
-    print "Deleting task: %s" % t.name
-    if raw_input("Are you sure? ").lower() in ["y", "yes"]:
-        t.delete()
-        print "Deleted"
-    else:
-        print "Canceled"
-
-def create(name, hour, command):
-    """Create a new task
-    :param name: Name of the task to create
-    :type name: str
-    :param hour: What hour to run it at, "*" for every hour
-    :type hour: str
-    :param command: The command to execute
-    :type command: str
-    """
-    from boto.manage.task import Task
-    t = Task()
-    t.name = name
-    t.hour = hour
-    t.command = command
-    t.put()
-    print "Created task: %s" % t.id
-
-if __name__ == "__main__":
-    try:
-        import readline
-    except ImportError:
-        pass
-    import boto
-    import sys
-    from optparse import OptionParser
-    from boto.mashups.iobject import IObject
-    parser = OptionParser(version=__version__, usage=usage)
-
-    (options, args) = parser.parse_args()
-
-    if len(args) < 1:
-        parser.print_help()
-        sys.exit(1)
-
-    command = args[0].lower()
-    if command in ("ls", "list"):
-        list()
-    elif command == "get":
-        get(args[1])
-    elif command == "create":
-        create(args[1], args[2], args[3])
-    elif command == "delete":
-        delete(args[1])