Mercurial > repos > shellac > guppy_basecaller
diff env/bin/taskadmin @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
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--- a/env/bin/taskadmin Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,116 +0,0 @@ -#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 -# Copyright (c) 2009 Chris Moyer http://coredumped.org/ -# -# Permission is hereby granted, free of charge, to any person obtaining a -# copy of this software and associated documentation files (the -# "Software"), to deal in the Software without restriction, including -# without limitation the rights to use, copy, modify, merge, publish, dis- -# tribute, sublicense, and/or sell copies of the Software, and to permit -# persons to whom the Software is furnished to do so, subject to the fol- -# lowing conditions: -# -# The above copyright notice and this permission notice shall be included -# in all copies or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS -# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- -# ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT -# SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, -# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS - -# -# Task/Job Administration utility -# -VERSION="0.1" -__version__ = VERSION -usage = """%prog [options] [command] -Commands: - list|ls List all Tasks in SDB - delete <id> Delete Task with id <id> - get <name> Get Task <name> - create|mk <name> <hour> <command> Create a new Task <name> with command <command> running every <hour> -""" - -def list(): - """List all Tasks in SDB""" - from boto.manage.task import Task - print "%-8s %-40s %s" % ("Hour", "Name", "Command") - print "-"*100 - for t in Task.all(): - print "%-8s %-40s %s" % (t.hour, t.name, t.command) - -def get(name): - """Get a task - :param name: The name of the task to fetch - :type name: str - """ - from boto.manage.task import Task - q = Task.find() - q.filter("name like", "%s%%" % name) - for t in q: - print "="*80 - print "| ", t.id - print "|%s" % ("-"*79) - print "| Name: ", t.name - print "| Hour: ", t.hour - print "| Command: ", t.command - if t.last_executed: - print "| Last Run: ", t.last_executed.ctime() - print "| Last Status: ", t.last_status - print "| Last Run Log: ", t.last_output - print "="*80 - -def delete(id): - from boto.manage.task import Task - t = Task.get_by_id(id) - print "Deleting task: %s" % t.name - if raw_input("Are you sure? ").lower() in ["y", "yes"]: - t.delete() - print "Deleted" - else: - print "Canceled" - -def create(name, hour, command): - """Create a new task - :param name: Name of the task to create - :type name: str - :param hour: What hour to run it at, "*" for every hour - :type hour: str - :param command: The command to execute - :type command: str - """ - from boto.manage.task import Task - t = Task() - t.name = name - t.hour = hour - t.command = command - t.put() - print "Created task: %s" % t.id - -if __name__ == "__main__": - try: - import readline - except ImportError: - pass - import boto - import sys - from optparse import OptionParser - from boto.mashups.iobject import IObject - parser = OptionParser(version=__version__, usage=usage) - - (options, args) = parser.parse_args() - - if len(args) < 1: - parser.print_help() - sys.exit(1) - - command = args[0].lower() - if command in ("ls", "list"): - list() - elif command == "get": - get(args[1]) - elif command == "create": - create(args[1], args[2], args[3]) - elif command == "delete": - delete(args[1])