diff env/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
line wrap: on
line diff
--- a/env/lib/python3.7/site-packages/bioblend/_tests/GalaxyTestBase.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-import os
-
-import bioblend
-import bioblend.galaxy
-from . import test_util
-from .test_util import unittest
-
-bioblend.set_stream_logger('test', level='INFO')
-
-BIOBLEND_TEST_JOB_TIMEOUT = int(os.environ.get("BIOBLEND_TEST_JOB_TIMEOUT", "60"))
-
-
-@test_util.skip_unless_galaxy()
-class GalaxyTestBase(unittest.TestCase):
-
-    def setUp(self):
-        galaxy_key = os.environ['BIOBLEND_GALAXY_API_KEY']
-        galaxy_url = os.environ['BIOBLEND_GALAXY_URL']
-        self.gi = bioblend.galaxy.GalaxyInstance(url=galaxy_url, key=galaxy_key)
-
-    def _test_dataset(self, history_id, contents="1\t2\t3", **kwds):
-        tool_output = self.gi.tools.paste_content(contents, history_id, **kwds)
-        return tool_output["outputs"][0]["id"]
-
-    def _wait_and_verify_dataset(self, dataset_id, expected_contents, timeout_seconds=BIOBLEND_TEST_JOB_TIMEOUT):
-        dataset_contents = self.gi.datasets.download_dataset(dataset_id, maxwait=timeout_seconds)
-        self.assertEqual(dataset_contents, expected_contents)