Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/bioblend/galaxy/tools/inputs.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
children |
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--- a/env/lib/python3.7/site-packages/bioblend/galaxy/tools/inputs.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,75 +0,0 @@ -import six - - -class InputsBuilder(object): - """ - """ - - def __init__(self): - self._input_dict = {} - - def set(self, name, input): - self._input_dict[name] = input - return self - - def set_param(self, name, value): - return self.set(name, param(value=value)) - - def set_dataset_param(self, name, value, src="hda"): - return self.set(name, dataset(value, src=src)) - - def to_dict(self): - values = {} - for key, value in self.flat_iter(): - if hasattr(value, "value"): - value = value.value - values[key] = value - return values - - def flat_iter(self, prefix=None): - for key, value in six.iteritems(self._input_dict): - effective_key = key if prefix is None else "%s|%s" % (prefix, key) - if hasattr(value, "flat_iter"): - for flattened_key, flattened_value in value.flat_iter(effective_key): - yield flattened_key, flattened_value - else: - yield effective_key, value - - -class RepeatBuilder(object): - - def __init__(self): - self._instances = [] - - def instance(self, inputs): - self._instances.append(inputs) - return self - - def flat_iter(self, prefix=None): - for index, instance in enumerate(self._instances): - index_prefix = "%s_%d" % (prefix, index) - for key, value in instance.flat_iter(index_prefix): - yield key, value - - -class Param(object): - - def __init__(self, value): - self.value = value - - -class DatasetParam(Param): - - def __init__(self, value, src="hda"): - if not isinstance(value, dict): - value = dict(src=src, id=value) - super(DatasetParam, self).__init__(value) - - -inputs = InputsBuilder -repeat = RepeatBuilder -conditional = InputsBuilder -param = Param -dataset = DatasetParam - -__all__ = ("inputs", "repeat", "conditional", "param")