--- a/env/lib/python3.7/site-packages/cwltool/tests/test_ext.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,210 +0,0 @@
-from __future__ import absolute_import
-
-import os
-import shutil
-import tempfile
-import sys
-import re
-from io import StringIO
-
-import pytest
-
-from cwltool.main import main
-import cwltool.process
-
-
-from .util import get_data, needs_docker, temp_dir, windows_needs_docker
-
-
-@needs_docker
-def test_missing_enable_ext():
-    # Require that --enable-ext is provided.
-    assert main([get_data('tests/wf/listing_deep.cwl'), get_data('tests/listing-job.yml')]) != 0
-
-@needs_docker
-def test_listing_deep():
-    params = ["--enable-ext", get_data('tests/wf/listing_deep.cwl'),
-              get_data('tests/listing-job.yml')]
-    assert main(params) == 0
-
-@needs_docker
-def test_cwltool_options():
-    try:
-        opt = os.environ.get("CWLTOOL_OPTIONS")
-        os.environ["CWLTOOL_OPTIONS"] = "--enable-ext"
-        params = [get_data('tests/wf/listing_deep.cwl'),
-                  get_data('tests/listing-job.yml')]
-        assert main(params) == 0
-    finally:
-        if opt is not None:
-            os.environ["CWLTOOL_OPTIONS"] = opt
-        else:
-            del os.environ["CWLTOOL_OPTIONS"]
-
-@needs_docker
-def test_listing_shallow():
-    # This fails on purpose, because it tries to access listing in a subdirectory
-    # the same way that listing_deep does, but it shouldn't be expanded.
-    params = ["--enable-ext", get_data('tests/wf/listing_shallow.cwl'),
-              get_data('tests/listing-job.yml')]
-    assert main(params) != 0
-
-@needs_docker
-def test_listing_none():
-    # This fails on purpose, because it tries to access listing but it shouldn't be there.
-    params = ["--enable-ext", get_data('tests/wf/listing_none.cwl'),
-              get_data('tests/listing-job.yml')]
-    assert main(params) != 0
-
-@needs_docker
-def test_listing_v1_0():
-    # Default behavior in 1.0 is deep expansion.
-    assert main([get_data('tests/wf/listing_v1_0.cwl'), get_data('tests/listing-job.yml')]) == 0
-
-@pytest.mark.skip(reason="This is not the default behaviour yet")
-@needs_docker
-def test_listing_v1_1():
-    # Default behavior in 1.1 will be no expansion
-    assert main([get_data('tests/wf/listing_v1_1.cwl'), get_data('tests/listing-job.yml')]) != 0
-
-@needs_docker
-def test_double_overwrite(tmpdir):
-    with temp_dir() as tmp:
-        tmp_name = os.path.join(tmp, "value")
-
-        before_value, expected_value = "1", "3"
-
-        with open(tmp_name, "w") as f:
-            f.write(before_value)
-
-        assert main(["--enable-ext", "--outdir", str(tmpdir),
-                     get_data('tests/wf/mut2.cwl'), "-a", tmp_name]) == 0
-
-        with open(tmp_name, "r") as f:
-            actual_value = f.read()
-
-        assert actual_value == expected_value
-
-@needs_docker
-def test_disable_file_overwrite_without_ext():
-    with temp_dir() as tmp:
-        with temp_dir() as out:
-            tmp_name = os.path.join(tmp, "value")
-            out_name = os.path.join(out, "value")
-
-            before_value, expected_value = "1", "2"
-
-            with open(tmp_name, "w") as f:
-                f.write(before_value)
-
-            assert main(["--outdir", out, get_data('tests/wf/updateval.cwl'), "-r", tmp_name]) == 0
-
-            with open(tmp_name, "r") as f:
-                tmp_value = f.read()
-            with open(out_name, "r") as f:
-                out_value = f.read()
-
-            assert tmp_value == before_value
-            assert out_value == expected_value
-
-@needs_docker
-def test_disable_dir_overwrite_without_ext():
-    with temp_dir() as tmp:
-        with temp_dir() as out:
-
-            assert main(["--outdir", out, get_data('tests/wf/updatedir.cwl'), "-r", tmp]) == 0
-
-            assert not os.listdir(tmp)
-            assert os.listdir(out)
-
-@needs_docker
-def test_disable_file_creation_in_outdir_with_ext():
-    with temp_dir() as tmp:
-        with temp_dir() as out:
-
-            tmp_name = os.path.join(tmp, "value")
-            out_name = os.path.join(out, "value")
-
-            before_value, expected_value = "1", "2"
-
-            with open(tmp_name, "w") as f:
-                f.write(before_value)
-
-            params = ["--enable-ext", "--leave-outputs", "--outdir",
-                      out, get_data('tests/wf/updateval_inplace.cwl'), "-r", tmp_name]
-            assert main(params) == 0
-
-            with open(tmp_name, "r") as f:
-                tmp_value = f.read()
-
-            assert tmp_value == expected_value
-            assert not os.path.exists(out_name)
-
-@needs_docker
-def test_disable_dir_creation_in_outdir_with_ext():
-    with temp_dir() as tmp:
-        with temp_dir() as out:
-            params = ["--enable-ext", "--leave-outputs", "--outdir",
-                      out, get_data('tests/wf/updatedir_inplace.cwl'), "-r", tmp]
-            assert main(params) == 0
-
-            assert os.listdir(tmp)
-            assert not os.listdir(out)
-
-@needs_docker
-def test_write_write_conflict():
-    with temp_dir('tmp') as tmp:
-        tmp_name = os.path.join(tmp, "value")
-
-        before_value, expected_value = "1", "2"
-
-        with open(tmp_name, "w") as f:
-            f.write(before_value)
-
-        assert main(["--enable-ext", get_data('tests/wf/mut.cwl'), "-a", tmp_name]) != 0
-
-        with open(tmp_name, "r") as f:
-            tmp_value = f.read()
-
-        assert tmp_value == expected_value
-
-@pytest.mark.skip(reason="This test is non-deterministic")
-def test_read_write_conflict():
-    with temp_dir('tmp') as tmp:
-        tmp_name = os.path.join(tmp, "value")
-
-        with open(tmp_name, "w") as f:
-            f.write("1")
-
-        assert main(["--enable-ext", get_data('tests/wf/mut3.cwl'), "-a", tmp_name]) != 0
-
-@needs_docker
-def test_require_prefix_networkaccess():
-    assert main(["--enable-ext", get_data('tests/wf/networkaccess.cwl')]) == 0
-    assert main([get_data('tests/wf/networkaccess.cwl')]) != 0
-    assert main(["--enable-ext", get_data('tests/wf/networkaccess-fail.cwl')]) != 0
-
-@needs_docker
-def test_require_prefix_workreuse(tmpdir):
-    assert main(["--enable-ext", '--outdir', str(tmpdir), get_data('tests/wf/workreuse.cwl')]) == 0
-    assert main([get_data('tests/wf/workreuse.cwl')]) != 0
-    assert main(["--enable-ext", get_data('tests/wf/workreuse-fail.cwl')]) != 0
-
-@windows_needs_docker
-def test_require_prefix_timelimit():
-    assert main(["--enable-ext", get_data('tests/wf/timelimit.cwl')]) == 0
-    assert main([get_data('tests/wf/timelimit.cwl')]) != 0
-    assert main(["--enable-ext", get_data('tests/wf/timelimit-fail.cwl')]) != 0
-
-def test_warn_large_inputs():
-    was = cwltool.process.FILE_COUNT_WARNING
-    try:
-        stream = StringIO()
-
-        cwltool.process.FILE_COUNT_WARNING = 3
-        main([get_data('tests/wf/listing_v1_0.cwl'), get_data('tests/listing2-job.yml')],
-             stderr=stream)
-
-        assert "Recursive directory listing has resulted in a large number of File" in re.sub("\n  *", " ", stream.getvalue())
-    finally:
-        cwltool.process.FILE_COUNT_WARNING = was